Hb_001856_130

Information

Type -
Description -
Location Contig1856: 178837-179487
Sequence    

Annotation

kegg
ID mdm:103448464
description cellulose synthase-like protein G3
nr
ID KDO36267.1
description hypothetical protein CISIN_1g022795mg [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067DB82
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022795mg PE=4 SV=1
Gene Ontology
ID GO:0016020
description cellulose synthase a catalytic subunit 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18158: 178408-179470 , PASA_asmbl_18159: 178408-179470
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001856_130 0.0 - - hypothetical protein CISIN_1g022795mg [Citrus sinensis]
2 Hb_000120_600 0.0723653999 - - PREDICTED: uncharacterized protein LOC105628582 [Jatropha curcas]
3 Hb_153180_010 0.0884941487 - - NBS-LRR disease resistance protein NBS49 [Dimocarpus longan]
4 Hb_001417_090 0.0912706975 - - PREDICTED: uncharacterized protein LOC105650625 [Jatropha curcas]
5 Hb_120040_010 0.0973526359 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
6 Hb_001953_010 0.1012240297 - - PREDICTED: bidirectional sugar transporter SWEET10-like [Jatropha curcas]
7 Hb_000000_320 0.1070736296 - - PREDICTED: calcium uniporter protein 4, mitochondrial [Jatropha curcas]
8 Hb_002804_070 0.1082585849 - - hypothetical protein JCGZ_05701 [Jatropha curcas]
9 Hb_001677_190 0.1098179188 - - ATP-binding cassette transporter, putative [Ricinus communis]
10 Hb_030827_080 0.1106110787 - - PREDICTED: uncharacterized protein LOC105648491 [Jatropha curcas]
11 Hb_000120_560 0.1117926362 - - protein with unknown function [Ricinus communis]
12 Hb_000714_070 0.1141224201 transcription factor TF Family: LOB hypothetical protein JCGZ_14754 [Jatropha curcas]
13 Hb_005111_020 0.115763608 - - hypothetical protein CISIN_1g0417821mg, partial [Citrus sinensis]
14 Hb_029576_070 0.1163243837 - - Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis]
15 Hb_002597_030 0.1188730653 - - -
16 Hb_000646_040 0.1202326429 - - PREDICTED: thiamine-repressible mitochondrial transport protein THI74-like [Jatropha curcas]
17 Hb_000739_190 0.1222487905 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
18 Hb_000139_390 0.1226301031 - - -
19 Hb_004474_070 0.1227923693 desease resistance Gene Name: NB-ARC Disease resistance protein RPP8, putative [Ricinus communis]
20 Hb_002739_160 0.1237959629 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001856_130 Hb_001856_130 Hb_000120_600 Hb_000120_600 Hb_001856_130--Hb_000120_600 Hb_153180_010 Hb_153180_010 Hb_001856_130--Hb_153180_010 Hb_001417_090 Hb_001417_090 Hb_001856_130--Hb_001417_090 Hb_120040_010 Hb_120040_010 Hb_001856_130--Hb_120040_010 Hb_001953_010 Hb_001953_010 Hb_001856_130--Hb_001953_010 Hb_000000_320 Hb_000000_320 Hb_001856_130--Hb_000000_320 Hb_002804_070 Hb_002804_070 Hb_000120_600--Hb_002804_070 Hb_000120_600--Hb_001953_010 Hb_017549_010 Hb_017549_010 Hb_000120_600--Hb_017549_010 Hb_004374_170 Hb_004374_170 Hb_000120_600--Hb_004374_170 Hb_004474_070 Hb_004474_070 Hb_000120_600--Hb_004474_070 Hb_030827_080 Hb_030827_080 Hb_153180_010--Hb_030827_080 Hb_002739_160 Hb_002739_160 Hb_153180_010--Hb_002739_160 Hb_001198_180 Hb_001198_180 Hb_153180_010--Hb_001198_180 Hb_002522_040 Hb_002522_040 Hb_153180_010--Hb_002522_040 Hb_008725_020 Hb_008725_020 Hb_153180_010--Hb_008725_020 Hb_001417_090--Hb_120040_010 Hb_000739_190 Hb_000739_190 Hb_001417_090--Hb_000739_190 Hb_004970_100 Hb_004970_100 Hb_001417_090--Hb_004970_100 Hb_000614_120 Hb_000614_120 Hb_001417_090--Hb_000614_120 Hb_000120_560 Hb_000120_560 Hb_001417_090--Hb_000120_560 Hb_008021_050 Hb_008021_050 Hb_120040_010--Hb_008021_050 Hb_000149_020 Hb_000149_020 Hb_120040_010--Hb_000149_020 Hb_009225_070 Hb_009225_070 Hb_120040_010--Hb_009225_070 Hb_120040_010--Hb_002522_040 Hb_001953_010--Hb_004474_070 Hb_001953_010--Hb_000000_320 Hb_001953_010--Hb_002804_070 Hb_002303_050 Hb_002303_050 Hb_001953_010--Hb_002303_050 Hb_001022_070 Hb_001022_070 Hb_001953_010--Hb_001022_070 Hb_128216_010 Hb_128216_010 Hb_001953_010--Hb_128216_010 Hb_004112_070 Hb_004112_070 Hb_000000_320--Hb_004112_070 Hb_005111_020 Hb_005111_020 Hb_000000_320--Hb_005111_020 Hb_000000_320--Hb_001022_070 Hb_003427_020 Hb_003427_020 Hb_000000_320--Hb_003427_020 Hb_000000_320--Hb_004474_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 10.8925 8.80508 31.7866 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.43827 3.31267

CAGE analysis