Hb_001856_150

Information

Type -
Description -
Location Contig1856: 203098-203747
Sequence    

Annotation

kegg
ID tcc:TCM_018843
description Malectin/receptor protein kinase family protein
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18160: 202963-203745 , PASA_asmbl_18161: 203242-203745
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001856_150 0.0 - - -
2 Hb_006314_020 0.0531484879 - - PREDICTED: GABA transporter 1-like [Jatropha curcas]
3 Hb_000230_160 0.0745275889 - - PREDICTED: uncharacterized protein LOC105631858 isoform X1 [Jatropha curcas]
4 Hb_003435_070 0.0910807038 - - PREDICTED: probable pectate lyase 12 isoform X3 [Jatropha curcas]
5 Hb_000081_030 0.0918287179 - - BnaC09g05810D [Brassica napus]
6 Hb_003171_070 0.0939377813 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Citrus sinensis]
7 Hb_004875_040 0.0942594163 - - PREDICTED: uncharacterized protein LOC105645797 [Jatropha curcas]
8 Hb_000676_380 0.0957483006 - - cytochrome P450 family protein [Populus trichocarpa]
9 Hb_003058_180 0.0982205392 transcription factor TF Family: HSF hypothetical protein POPTR_0001s28040g [Populus trichocarpa]
10 Hb_148817_010 0.0988526051 - - PREDICTED: CASP-like protein 1D1 [Jatropha curcas]
11 Hb_020805_110 0.1039453758 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
12 Hb_003371_040 0.1044300552 - - PREDICTED: uncharacterized protein LOC105650327 [Jatropha curcas]
13 Hb_001775_130 0.1055882818 - - Prephenate dehydratase [Hevea brasiliensis]
14 Hb_000286_030 0.1069108048 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
15 Hb_002876_190 0.1074646524 transcription factor TF Family: GRAS hypothetical protein PRUPE_ppa017519mg [Prunus persica]
16 Hb_005333_120 0.1089486082 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2 [Jatropha curcas]
17 Hb_009711_040 0.1140005415 - - PREDICTED: uncharacterized protein LOC105647789 [Jatropha curcas]
18 Hb_000967_010 0.1206327935 - - hypothetical protein JCGZ_08336 [Jatropha curcas]
19 Hb_000306_050 0.1279180571 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
20 Hb_006120_010 0.128521976 - - invertase inhibitor [Manihot esculenta]

Gene co-expression network

sample Hb_001856_150 Hb_001856_150 Hb_006314_020 Hb_006314_020 Hb_001856_150--Hb_006314_020 Hb_000230_160 Hb_000230_160 Hb_001856_150--Hb_000230_160 Hb_003435_070 Hb_003435_070 Hb_001856_150--Hb_003435_070 Hb_000081_030 Hb_000081_030 Hb_001856_150--Hb_000081_030 Hb_003171_070 Hb_003171_070 Hb_001856_150--Hb_003171_070 Hb_004875_040 Hb_004875_040 Hb_001856_150--Hb_004875_040 Hb_003371_040 Hb_003371_040 Hb_006314_020--Hb_003371_040 Hb_006314_020--Hb_000230_160 Hb_006314_020--Hb_003171_070 Hb_148817_010 Hb_148817_010 Hb_006314_020--Hb_148817_010 Hb_006314_020--Hb_000081_030 Hb_003058_180 Hb_003058_180 Hb_000230_160--Hb_003058_180 Hb_000230_160--Hb_000081_030 Hb_000286_030 Hb_000286_030 Hb_000230_160--Hb_000286_030 Hb_028008_030 Hb_028008_030 Hb_000230_160--Hb_028008_030 Hb_005333_120 Hb_005333_120 Hb_003435_070--Hb_005333_120 Hb_000967_010 Hb_000967_010 Hb_003435_070--Hb_000967_010 Hb_118707_020 Hb_118707_020 Hb_003435_070--Hb_118707_020 Hb_003435_070--Hb_003058_180 Hb_008727_030 Hb_008727_030 Hb_003435_070--Hb_008727_030 Hb_000081_030--Hb_000286_030 Hb_000761_030 Hb_000761_030 Hb_000081_030--Hb_000761_030 Hb_000081_030--Hb_148817_010 Hb_000676_380 Hb_000676_380 Hb_003171_070--Hb_000676_380 Hb_003171_070--Hb_003371_040 Hb_161346_010 Hb_161346_010 Hb_003171_070--Hb_161346_010 Hb_000429_030 Hb_000429_030 Hb_003171_070--Hb_000429_030 Hb_020805_110 Hb_020805_110 Hb_004875_040--Hb_020805_110 Hb_004875_040--Hb_148817_010 Hb_000098_210 Hb_000098_210 Hb_004875_040--Hb_000098_210 Hb_004875_040--Hb_000676_380 Hb_004875_040--Hb_006314_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0627144 23.7199 4.25463 98.6872 0.358426 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 104.844 5.54981

CAGE analysis