Hb_001856_210

Information

Type -
Description -
Location Contig1856: 261624-264035
Sequence    

Annotation

kegg
ID rcu:RCOM_1027080
description hypothetical protein
nr
ID XP_012084837.1
description PREDICTED: uncharacterized protein LOC105644171 [Jatropha curcas]
swissprot
ID O94336
description Uncharacterized FCP1 homology domain-containing protein C1271.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1271.03c PE=3 SV=1
trembl
ID A0A067JTI9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19960 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ubiquitin-like domain-containing ctd phosphatase 1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18172: 261575-261915 , PASA_asmbl_18173: 261972-263155
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001856_210 0.0 - - PREDICTED: uncharacterized protein LOC105644171 [Jatropha curcas]
2 Hb_000445_260 0.0778308773 - - PREDICTED: uncharacterized protein LOC105127729 [Populus euphratica]
3 Hb_174639_010 0.0785799047 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_010080_050 0.08431547 - - PREDICTED: uncharacterized protein LOC105635251 [Jatropha curcas]
5 Hb_000878_080 0.0853203533 - - PREDICTED: uncharacterized protein LOC105635777 [Jatropha curcas]
6 Hb_004880_040 0.0892860868 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X1 [Jatropha curcas]
7 Hb_009113_020 0.0912863415 - - PREDICTED: probable polygalacturonase non-catalytic subunit JP650 [Jatropha curcas]
8 Hb_003464_010 0.0990821441 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005211_170 0.0991253632 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Jatropha curcas]
10 Hb_003185_040 0.0991501997 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Populus euphratica]
11 Hb_011628_010 0.0999373233 - - tonoplast intrinsic protein, putative [Ricinus communis]
12 Hb_002307_150 0.1011139324 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA4-like [Jatropha curcas]
13 Hb_001709_120 0.1029316712 - - hypothetical protein RCOM_1313640 [Ricinus communis]
14 Hb_105377_010 0.1032247436 - - hypothetical protein PRUPE_ppa001414mg [Prunus persica]
15 Hb_002836_110 0.1047704347 transcription factor TF Family: TUB PREDICTED: tubby-like protein 8 [Jatropha curcas]
16 Hb_003055_160 0.1084327291 - - PREDICTED: S-linalool synthase isoform X1 [Jatropha curcas]
17 Hb_001971_040 0.1095205667 - - PREDICTED: beta-glucosidase 44-like [Jatropha curcas]
18 Hb_001136_080 0.1103531548 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Jatropha curcas]
19 Hb_003598_020 0.1128534571 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 12 [Jatropha curcas]
20 Hb_002028_270 0.1136149226 - - Pectinesterase-1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001856_210 Hb_001856_210 Hb_000445_260 Hb_000445_260 Hb_001856_210--Hb_000445_260 Hb_174639_010 Hb_174639_010 Hb_001856_210--Hb_174639_010 Hb_010080_050 Hb_010080_050 Hb_001856_210--Hb_010080_050 Hb_000878_080 Hb_000878_080 Hb_001856_210--Hb_000878_080 Hb_004880_040 Hb_004880_040 Hb_001856_210--Hb_004880_040 Hb_009113_020 Hb_009113_020 Hb_001856_210--Hb_009113_020 Hb_000445_260--Hb_010080_050 Hb_005211_170 Hb_005211_170 Hb_000445_260--Hb_005211_170 Hb_003464_010 Hb_003464_010 Hb_000445_260--Hb_003464_010 Hb_002307_150 Hb_002307_150 Hb_000445_260--Hb_002307_150 Hb_000445_260--Hb_000878_080 Hb_001007_020 Hb_001007_020 Hb_174639_010--Hb_001007_020 Hb_001709_120 Hb_001709_120 Hb_174639_010--Hb_001709_120 Hb_001056_040 Hb_001056_040 Hb_174639_010--Hb_001056_040 Hb_001863_330 Hb_001863_330 Hb_174639_010--Hb_001863_330 Hb_000320_010 Hb_000320_010 Hb_174639_010--Hb_000320_010 Hb_010080_050--Hb_002307_150 Hb_010080_050--Hb_005211_170 Hb_001971_040 Hb_001971_040 Hb_010080_050--Hb_001971_040 Hb_089140_070 Hb_089140_070 Hb_010080_050--Hb_089140_070 Hb_002028_270 Hb_002028_270 Hb_000878_080--Hb_002028_270 Hb_097292_010 Hb_097292_010 Hb_000878_080--Hb_097292_010 Hb_002894_060 Hb_002894_060 Hb_000878_080--Hb_002894_060 Hb_002203_010 Hb_002203_010 Hb_000878_080--Hb_002203_010 Hb_004005_060 Hb_004005_060 Hb_000878_080--Hb_004005_060 Hb_003185_040 Hb_003185_040 Hb_004880_040--Hb_003185_040 Hb_105377_010 Hb_105377_010 Hb_004880_040--Hb_105377_010 Hb_003598_020 Hb_003598_020 Hb_004880_040--Hb_003598_020 Hb_004880_040--Hb_000878_080 Hb_003085_070 Hb_003085_070 Hb_004880_040--Hb_003085_070 Hb_002686_320 Hb_002686_320 Hb_009113_020--Hb_002686_320 Hb_002836_110 Hb_002836_110 Hb_009113_020--Hb_002836_110 Hb_000538_290 Hb_000538_290 Hb_009113_020--Hb_000538_290 Hb_009545_060 Hb_009545_060 Hb_009113_020--Hb_009545_060 Hb_005398_050 Hb_005398_050 Hb_009113_020--Hb_005398_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0308326 0.849245 1.18646 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0400973 0.137718

CAGE analysis