Hb_001856_220

Information

Type -
Description -
Location Contig1856: 270172-274954
Sequence    

Annotation

kegg
ID rcu:RCOM_1027070
description hypothetical protein
nr
ID XP_002527633.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9S823
description Protein LONGIFOLIA 2 OS=Arabidopsis thaliana GN=LNG2 PE=1 SV=1
trembl
ID B9SNR4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1027070 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18174: 269652-269967 , PASA_asmbl_18175: 271401-271603 , PASA_asmbl_18176: 271487-271755 , PASA_asmbl_18177: 272028-273575 , PASA_asmbl_18178: 273881-274123 , PASA_asmbl_18179: 274194-274868
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001856_220 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_008937_010 0.0761173878 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80A2 isoform X2 [Jatropha curcas]
3 Hb_003181_040 0.0808513647 - - PREDICTED: uncharacterized protein LOC105647655 isoform X1 [Jatropha curcas]
4 Hb_003918_030 0.0887861655 - - PREDICTED: oxysterol-binding protein-related protein 1C-like isoform X1 [Jatropha curcas]
5 Hb_010407_060 0.0888296213 - - PREDICTED: probable methyltransferase PMT3 [Jatropha curcas]
6 Hb_001545_150 0.0950965861 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105635527 [Jatropha curcas]
7 Hb_002071_050 0.0996149871 - - PREDICTED: mitogen-activated protein kinase kinase 5-like [Jatropha curcas]
8 Hb_003894_120 0.1002542526 - - PREDICTED: uncharacterized protein LOC105643110 [Jatropha curcas]
9 Hb_000479_070 0.1011958314 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
10 Hb_020805_150 0.1020392494 - - ubiquitin-protein ligase, putative [Ricinus communis]
11 Hb_143766_060 0.1027693363 - - PREDICTED: F-box/LRR-repeat protein At4g29420 [Jatropha curcas]
12 Hb_008253_020 0.1028763066 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
13 Hb_000252_210 0.1036942296 - - PREDICTED: uncharacterized protein LOC105644655 [Jatropha curcas]
14 Hb_003398_080 0.1044188036 - - PREDICTED: telomere repeat-binding protein 4 isoform X3 [Jatropha curcas]
15 Hb_127311_010 0.1047990989 - - hypothetical protein JCGZ_07497 [Jatropha curcas]
16 Hb_030827_020 0.1108030314 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
17 Hb_001258_020 0.1114185045 - - PREDICTED: protein RMD5 homolog A [Jatropha curcas]
18 Hb_000809_160 0.1116276274 - - hypothetical protein JCGZ_12355 [Jatropha curcas]
19 Hb_000991_040 0.1119087012 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Gossypium raimondii]
20 Hb_004725_050 0.1121549043 - - Rhomboid protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001856_220 Hb_001856_220 Hb_008937_010 Hb_008937_010 Hb_001856_220--Hb_008937_010 Hb_003181_040 Hb_003181_040 Hb_001856_220--Hb_003181_040 Hb_003918_030 Hb_003918_030 Hb_001856_220--Hb_003918_030 Hb_010407_060 Hb_010407_060 Hb_001856_220--Hb_010407_060 Hb_001545_150 Hb_001545_150 Hb_001856_220--Hb_001545_150 Hb_002071_050 Hb_002071_050 Hb_001856_220--Hb_002071_050 Hb_008937_010--Hb_010407_060 Hb_001489_100 Hb_001489_100 Hb_008937_010--Hb_001489_100 Hb_008253_020 Hb_008253_020 Hb_008937_010--Hb_008253_020 Hb_000120_910 Hb_000120_910 Hb_008937_010--Hb_000120_910 Hb_000402_230 Hb_000402_230 Hb_008937_010--Hb_000402_230 Hb_003181_040--Hb_008937_010 Hb_000115_340 Hb_000115_340 Hb_003181_040--Hb_000115_340 Hb_001258_020 Hb_001258_020 Hb_003181_040--Hb_001258_020 Hb_003398_080 Hb_003398_080 Hb_003181_040--Hb_003398_080 Hb_004553_030 Hb_004553_030 Hb_003181_040--Hb_004553_030 Hb_000479_070 Hb_000479_070 Hb_003918_030--Hb_000479_070 Hb_003918_030--Hb_001545_150 Hb_001473_110 Hb_001473_110 Hb_003918_030--Hb_001473_110 Hb_003929_210 Hb_003929_210 Hb_003918_030--Hb_003929_210 Hb_003939_060 Hb_003939_060 Hb_003918_030--Hb_003939_060 Hb_000110_350 Hb_000110_350 Hb_003918_030--Hb_000110_350 Hb_001257_030 Hb_001257_030 Hb_010407_060--Hb_001257_030 Hb_010407_060--Hb_000120_910 Hb_004044_050 Hb_004044_050 Hb_010407_060--Hb_004044_050 Hb_027654_020 Hb_027654_020 Hb_010407_060--Hb_027654_020 Hb_022425_030 Hb_022425_030 Hb_010407_060--Hb_022425_030 Hb_001545_150--Hb_000479_070 Hb_001089_050 Hb_001089_050 Hb_001545_150--Hb_001089_050 Hb_031042_050 Hb_031042_050 Hb_001545_150--Hb_031042_050 Hb_001545_150--Hb_000402_230 Hb_001279_120 Hb_001279_120 Hb_001545_150--Hb_001279_120 Hb_000252_210 Hb_000252_210 Hb_002071_050--Hb_000252_210 Hb_001405_160 Hb_001405_160 Hb_002071_050--Hb_001405_160 Hb_009028_010 Hb_009028_010 Hb_002071_050--Hb_009028_010 Hb_005015_080 Hb_005015_080 Hb_002071_050--Hb_005015_080 Hb_007850_090 Hb_007850_090 Hb_002071_050--Hb_007850_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.47959 13.7839 6.19197 9.93163 6.22453 4.62
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.20289 3.7282 5.93388 2.86867 6.3275

CAGE analysis