Hb_001856_290

Information

Type -
Description -
Location Contig1856: 328286-328585
Sequence    

Annotation

kegg
ID -
description -
nr
ID KDP44422.1
description hypothetical protein JCGZ_16255 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L7M9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16255 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18191: 328039-328647
cDNA
(Sanger)
(ID:Location)		 046_K02.ab1: 328043-328647

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001856_290 0.0 - - hypothetical protein JCGZ_16255 [Jatropha curcas]
2 Hb_052139_010 0.0597786696 - - PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like [Populus euphratica]
3 Hb_007101_090 0.0772188361 - - PREDICTED: protein ALTERED XYLOGLUCAN 4 [Jatropha curcas]
4 Hb_057716_010 0.0906259132 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
5 Hb_001001_130 0.091922061 - - hypothetical protein POPTR_0002s12860g [Populus trichocarpa]
6 Hb_054865_040 0.0949859659 - - PREDICTED: auxin-induced protein 15A [Jatropha curcas]
7 Hb_031194_020 0.0980415384 - - BnaCnng13030D [Brassica napus]
8 Hb_000645_270 0.1001756826 - - PREDICTED: uncharacterized protein LOC105122837 isoform X2 [Populus euphratica]
9 Hb_015807_020 0.1036093931 - - gibberellin 20-oxidase, putative [Ricinus communis]
10 Hb_000135_080 0.103640502 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
11 Hb_077151_010 0.1072183109 - - ankyrin repeat protein [Bruguiera gymnorhiza]
12 Hb_001999_330 0.1147651139 - - hypothetical protein PRUPE_ppa022262mg, partial [Prunus persica]
13 Hb_005678_030 0.1172387614 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
14 Hb_003073_030 0.1173173948 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004459_050 0.1194798887 - - conserved hypothetical protein [Ricinus communis]
16 Hb_040245_010 0.1214830557 - - hypothetical protein CISIN_1g039575mg, partial [Citrus sinensis]
17 Hb_000000_090 0.1224696645 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003622_050 0.1225281915 - - PREDICTED: respiratory burst oxidase homolog protein A-like [Jatropha curcas]
19 Hb_001053_050 0.1236661972 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Vitis vinifera]
20 Hb_000415_080 0.1273336571 - - -

Gene co-expression network

sample Hb_001856_290 Hb_001856_290 Hb_052139_010 Hb_052139_010 Hb_001856_290--Hb_052139_010 Hb_007101_090 Hb_007101_090 Hb_001856_290--Hb_007101_090 Hb_057716_010 Hb_057716_010 Hb_001856_290--Hb_057716_010 Hb_001001_130 Hb_001001_130 Hb_001856_290--Hb_001001_130 Hb_054865_040 Hb_054865_040 Hb_001856_290--Hb_054865_040 Hb_031194_020 Hb_031194_020 Hb_001856_290--Hb_031194_020 Hb_052139_010--Hb_031194_020 Hb_052139_010--Hb_007101_090 Hb_052139_010--Hb_001001_130 Hb_000645_270 Hb_000645_270 Hb_052139_010--Hb_000645_270 Hb_000000_090 Hb_000000_090 Hb_052139_010--Hb_000000_090 Hb_007101_090--Hb_001001_130 Hb_007101_090--Hb_000645_270 Hb_001999_330 Hb_001999_330 Hb_007101_090--Hb_001999_330 Hb_002010_010 Hb_002010_010 Hb_007101_090--Hb_002010_010 Hb_062192_050 Hb_062192_050 Hb_057716_010--Hb_062192_050 Hb_057716_010--Hb_052139_010 Hb_007533_050 Hb_007533_050 Hb_057716_010--Hb_007533_050 Hb_057716_010--Hb_031194_020 Hb_026188_010 Hb_026188_010 Hb_057716_010--Hb_026188_010 Hb_000135_080 Hb_000135_080 Hb_001001_130--Hb_000135_080 Hb_012528_040 Hb_012528_040 Hb_001001_130--Hb_012528_040 Hb_000858_050 Hb_000858_050 Hb_001001_130--Hb_000858_050 Hb_015807_020 Hb_015807_020 Hb_054865_040--Hb_015807_020 Hb_001146_030 Hb_001146_030 Hb_054865_040--Hb_001146_030 Hb_054865_040--Hb_007101_090 Hb_001085_200 Hb_001085_200 Hb_054865_040--Hb_001085_200 Hb_054865_040--Hb_052139_010 Hb_031194_020--Hb_000645_270 Hb_003622_050 Hb_003622_050 Hb_031194_020--Hb_003622_050 Hb_031194_020--Hb_000000_090 Hb_031194_020--Hb_007101_090 Hb_000844_060 Hb_000844_060 Hb_031194_020--Hb_000844_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.630173 14.0884 173.901 182.364 0.149695 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 137.939 1921.08

CAGE analysis