Hb_001860_050

Information

Type -
Description -
Location Contig1860: 78648-80531
Sequence    

Annotation

kegg
ID rcu:RCOM_1299940
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012078869.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Jatropha curcas]
swissprot
ID Q9LN01
description Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
trembl
ID A0A067KJM8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13395 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001860_050 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Jatropha curcas]
2 Hb_008554_130 0.0762336748 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105634317 [Jatropha curcas]
3 Hb_002154_100 0.0768504327 - - PREDICTED: putative ATP-dependent RNA helicase DHX33 [Jatropha curcas]
4 Hb_000329_710 0.0863698655 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]
5 Hb_005496_130 0.0885385832 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X2 [Jatropha curcas]
6 Hb_002391_310 0.088963131 - - hypothetical protein PRUPE_ppa021315mg [Prunus persica]
7 Hb_000635_250 0.0924374591 - - PREDICTED: uncharacterized protein LOC105635484 [Jatropha curcas]
8 Hb_013607_030 0.093403772 - - PREDICTED: uncharacterized protein At4g37920, chloroplastic [Jatropha curcas]
9 Hb_009767_110 0.0937323104 - - -
10 Hb_004800_080 0.0962649708 - - PREDICTED: acidic leucine-rich nuclear phosphoprotein 32-related protein [Jatropha curcas]
11 Hb_000317_050 0.096773521 - - formiminotransferase-cyclodeaminase, putative [Ricinus communis]
12 Hb_000061_210 0.0969092255 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR1 isoform X1 [Jatropha curcas]
13 Hb_044728_010 0.0969109373 - - -
14 Hb_011386_010 0.0979138486 - - mitochondrial carrier protein, putative [Ricinus communis]
15 Hb_110291_010 0.0979917043 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003878_070 0.0998433007 - - PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Jatropha curcas]
17 Hb_000538_160 0.1004584023 - - PREDICTED: RNA-binding protein 5 isoform X3 [Jatropha curcas]
18 Hb_000792_010 0.1010117436 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]
19 Hb_000003_320 0.1014465813 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 24 [Jatropha curcas]
20 Hb_000046_050 0.1016435373 - - PREDICTED: LEC14B homolog [Jatropha curcas]

Gene co-expression network

sample Hb_001860_050 Hb_001860_050 Hb_008554_130 Hb_008554_130 Hb_001860_050--Hb_008554_130 Hb_002154_100 Hb_002154_100 Hb_001860_050--Hb_002154_100 Hb_000329_710 Hb_000329_710 Hb_001860_050--Hb_000329_710 Hb_005496_130 Hb_005496_130 Hb_001860_050--Hb_005496_130 Hb_002391_310 Hb_002391_310 Hb_001860_050--Hb_002391_310 Hb_000635_250 Hb_000635_250 Hb_001860_050--Hb_000635_250 Hb_004800_080 Hb_004800_080 Hb_008554_130--Hb_004800_080 Hb_009767_110 Hb_009767_110 Hb_008554_130--Hb_009767_110 Hb_008554_130--Hb_005496_130 Hb_044728_010 Hb_044728_010 Hb_008554_130--Hb_044728_010 Hb_001369_730 Hb_001369_730 Hb_008554_130--Hb_001369_730 Hb_167498_010 Hb_167498_010 Hb_008554_130--Hb_167498_010 Hb_001014_160 Hb_001014_160 Hb_002154_100--Hb_001014_160 Hb_000331_260 Hb_000331_260 Hb_002154_100--Hb_000331_260 Hb_007390_010 Hb_007390_010 Hb_002154_100--Hb_007390_010 Hb_156279_020 Hb_156279_020 Hb_002154_100--Hb_156279_020 Hb_002154_100--Hb_044728_010 Hb_110291_010 Hb_110291_010 Hb_002154_100--Hb_110291_010 Hb_000792_010 Hb_000792_010 Hb_000329_710--Hb_000792_010 Hb_011386_010 Hb_011386_010 Hb_000329_710--Hb_011386_010 Hb_001004_060 Hb_001004_060 Hb_000329_710--Hb_001004_060 Hb_002518_260 Hb_002518_260 Hb_000329_710--Hb_002518_260 Hb_009486_140 Hb_009486_140 Hb_000329_710--Hb_009486_140 Hb_000041_110 Hb_000041_110 Hb_000329_710--Hb_000041_110 Hb_000165_250 Hb_000165_250 Hb_005496_130--Hb_000165_250 Hb_000291_050 Hb_000291_050 Hb_005496_130--Hb_000291_050 Hb_005496_130--Hb_009767_110 Hb_002725_120 Hb_002725_120 Hb_005496_130--Hb_002725_120 Hb_000029_050 Hb_000029_050 Hb_005496_130--Hb_000029_050 Hb_002391_310--Hb_004800_080 Hb_000056_240 Hb_000056_240 Hb_002391_310--Hb_000056_240 Hb_000556_160 Hb_000556_160 Hb_002391_310--Hb_000556_160 Hb_002391_310--Hb_000329_710 Hb_000710_060 Hb_000710_060 Hb_002391_310--Hb_000710_060 Hb_000041_100 Hb_000041_100 Hb_002391_310--Hb_000041_100 Hb_001258_040 Hb_001258_040 Hb_000635_250--Hb_001258_040 Hb_001545_120 Hb_001545_120 Hb_000635_250--Hb_001545_120 Hb_002044_080 Hb_002044_080 Hb_000635_250--Hb_002044_080 Hb_000635_250--Hb_044728_010 Hb_000635_250--Hb_002725_120 Hb_000635_250--Hb_009767_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.29892 1.33626 0.751674 0.69537 1.23086 1.63572
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.25425 2.50511 1.36528 1.40519 1.88162

CAGE analysis