Hb_001862_100

Information

Type -
Description -
Location Contig1862: 100031-104203
Sequence    

Annotation

kegg
ID pop:POPTR_0007s10270g
description hypothetical protein
nr
ID XP_012079345.1
description PREDICTED: uncharacterized protein LOC105639799 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KAI1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12489 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18289: 103586-104096
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001862_100 0.0 - - PREDICTED: uncharacterized protein LOC105639799 isoform X2 [Jatropha curcas]
2 Hb_003938_180 0.0698689164 - - lesion inducing family protein [Populus trichocarpa]
3 Hb_001829_060 0.0710824663 - - Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
4 Hb_001141_280 0.0738951332 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Vitis vinifera]
5 Hb_001109_020 0.0787143635 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000046_110 0.0831886406 - - PREDICTED: 54S ribosomal protein L39, mitochondrial [Jatropha curcas]
7 Hb_002028_130 0.0832153418 - - PREDICTED: MHC class II regulatory factor RFX1-like [Jatropha curcas]
8 Hb_001616_060 0.0910446006 - - PREDICTED: DNA-directed RNA polymerase subunit 10-like protein [Jatropha curcas]
9 Hb_002078_460 0.0916564706 - - -
10 Hb_003929_120 0.0934920517 - - PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Jatropha curcas]
11 Hb_000329_310 0.0952476716 - - PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]
12 Hb_005731_170 0.0956018304 - - hypothetical protein PRUPE_ppa011750mg [Prunus persica]
13 Hb_001258_080 0.0980769878 - - PREDICTED: uncharacterized protein LOC105639921 [Jatropha curcas]
14 Hb_002471_080 0.0984188773 - - oxidoreductase, putative [Ricinus communis]
15 Hb_001141_030 0.0985969735 - - hypothetical protein PRUPE_ppa024854mg [Prunus persica]
16 Hb_001575_020 0.0989634897 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002539_090 0.0990954907 - - PREDICTED: uncharacterized protein LOC103489178 [Cucumis melo]
18 Hb_003018_190 0.1000809169 - - PREDICTED: pentatricopeptide repeat-containing protein At4g31070, mitochondrial [Jatropha curcas]
19 Hb_002097_060 0.101469162 - - PREDICTED: 50S ribosomal protein L9, chloroplastic-like isoform X1 [Jatropha curcas]
20 Hb_000671_150 0.1018863474 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]

Gene co-expression network

sample Hb_001862_100 Hb_001862_100 Hb_003938_180 Hb_003938_180 Hb_001862_100--Hb_003938_180 Hb_001829_060 Hb_001829_060 Hb_001862_100--Hb_001829_060 Hb_001141_280 Hb_001141_280 Hb_001862_100--Hb_001141_280 Hb_001109_020 Hb_001109_020 Hb_001862_100--Hb_001109_020 Hb_000046_110 Hb_000046_110 Hb_001862_100--Hb_000046_110 Hb_002028_130 Hb_002028_130 Hb_001862_100--Hb_002028_130 Hb_000069_100 Hb_000069_100 Hb_003938_180--Hb_000069_100 Hb_002471_080 Hb_002471_080 Hb_003938_180--Hb_002471_080 Hb_005731_170 Hb_005731_170 Hb_003938_180--Hb_005731_170 Hb_007382_150 Hb_007382_150 Hb_003938_180--Hb_007382_150 Hb_148200_010 Hb_148200_010 Hb_003938_180--Hb_148200_010 Hb_001829_060--Hb_001109_020 Hb_000329_310 Hb_000329_310 Hb_001829_060--Hb_000329_310 Hb_001829_060--Hb_000046_110 Hb_003927_130 Hb_003927_130 Hb_001829_060--Hb_003927_130 Hb_009666_040 Hb_009666_040 Hb_001829_060--Hb_009666_040 Hb_000751_130 Hb_000751_130 Hb_001829_060--Hb_000751_130 Hb_001141_280--Hb_009666_040 Hb_001141_280--Hb_001829_060 Hb_003018_190 Hb_003018_190 Hb_001141_280--Hb_003018_190 Hb_000239_010 Hb_000239_010 Hb_001141_280--Hb_000239_010 Hb_001141_280--Hb_001109_020 Hb_001109_020--Hb_000046_110 Hb_001109_020--Hb_003927_130 Hb_000205_270 Hb_000205_270 Hb_001109_020--Hb_000205_270 Hb_000883_050 Hb_000883_050 Hb_001109_020--Hb_000883_050 Hb_000086_070 Hb_000086_070 Hb_001109_020--Hb_000086_070 Hb_000046_110--Hb_000751_130 Hb_008311_010 Hb_008311_010 Hb_000046_110--Hb_008311_010 Hb_003632_010 Hb_003632_010 Hb_000046_110--Hb_003632_010 Hb_000046_110--Hb_003927_130 Hb_001718_100 Hb_001718_100 Hb_002028_130--Hb_001718_100 Hb_002716_070 Hb_002716_070 Hb_002028_130--Hb_002716_070 Hb_002078_460 Hb_002078_460 Hb_002028_130--Hb_002078_460 Hb_001616_060 Hb_001616_060 Hb_002028_130--Hb_001616_060 Hb_000030_100 Hb_000030_100 Hb_002028_130--Hb_000030_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.653403 0.241925 0.212448 0.345915 0.647701 1.41844
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.60992 2.53092 2.3631 0.574003 0.275509

CAGE analysis