Hb_001862_110

Information

Type -
Description -
Location Contig1862: 105091-111859
Sequence    

Annotation

kegg
ID pop:POPTR_0007s10280g
description hypothetical protein
nr
ID XP_012079340.1
description PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
swissprot
ID O22193
description U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3
trembl
ID U5G863
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s10280g PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001862_110 0.0 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
2 Hb_007054_040 0.0525821252 - - PREDICTED: protein RST1 [Jatropha curcas]
3 Hb_001541_250 0.0629271478 - - PREDICTED: integrator complex subunit 9 homolog isoform X1 [Jatropha curcas]
4 Hb_009486_160 0.0748573414 - - PREDICTED: metacaspase-1 [Jatropha curcas]
5 Hb_001488_040 0.0752210318 - - PREDICTED: nipped-B-like protein A [Jatropha curcas]
6 Hb_000926_150 0.0760936031 - - PREDICTED: splicing factor, suppressor of white-apricot homolog isoform X1 [Jatropha curcas]
7 Hb_002812_010 0.0790910177 - - PREDICTED: chitin elicitor receptor kinase 1 isoform X1 [Jatropha curcas]
8 Hb_002374_290 0.0862659828 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 26 isoform X1 [Jatropha curcas]
9 Hb_000631_120 0.0867365673 - - hypothetical protein CISIN_1g0431902mg, partial [Citrus sinensis]
10 Hb_000363_120 0.0869676122 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]
11 Hb_001257_100 0.0876919394 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FB isoform X1 [Jatropha curcas]
12 Hb_001935_140 0.0900436066 - - CCR4-NOT transcription complex subunit 1 [Gossypium arboreum]
13 Hb_001268_310 0.0909287738 - - -
14 Hb_004899_040 0.0945219648 transcription factor TF Family: ARF Auxin response factor [Medicago truncatula]
15 Hb_011249_060 0.0963498312 - - hypothetical protein POPTR_0018s12600g [Populus trichocarpa]
16 Hb_000373_100 0.0964081287 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]
17 Hb_009028_010 0.0998603178 - - PREDICTED: probable disease resistance protein At1g12280 [Jatropha curcas]
18 Hb_000720_150 0.100313847 - - PREDICTED: uncharacterized protein LOC105645849 isoform X3 [Jatropha curcas]
19 Hb_000094_090 0.1005252348 - - PREDICTED: DUF21 domain-containing protein At1g47330 isoform X1 [Jatropha curcas]
20 Hb_000809_170 0.1011158083 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein 1 homolog isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001862_110 Hb_001862_110 Hb_007054_040 Hb_007054_040 Hb_001862_110--Hb_007054_040 Hb_001541_250 Hb_001541_250 Hb_001862_110--Hb_001541_250 Hb_009486_160 Hb_009486_160 Hb_001862_110--Hb_009486_160 Hb_001488_040 Hb_001488_040 Hb_001862_110--Hb_001488_040 Hb_000926_150 Hb_000926_150 Hb_001862_110--Hb_000926_150 Hb_002812_010 Hb_002812_010 Hb_001862_110--Hb_002812_010 Hb_007054_040--Hb_001541_250 Hb_000373_100 Hb_000373_100 Hb_007054_040--Hb_000373_100 Hb_001935_140 Hb_001935_140 Hb_007054_040--Hb_001935_140 Hb_005389_160 Hb_005389_160 Hb_007054_040--Hb_005389_160 Hb_000169_170 Hb_000169_170 Hb_007054_040--Hb_000169_170 Hb_001541_250--Hb_001935_140 Hb_002374_290 Hb_002374_290 Hb_001541_250--Hb_002374_290 Hb_009028_010 Hb_009028_010 Hb_001541_250--Hb_009028_010 Hb_000809_170 Hb_000809_170 Hb_001541_250--Hb_000809_170 Hb_011249_060 Hb_011249_060 Hb_009486_160--Hb_011249_060 Hb_009486_160--Hb_002812_010 Hb_004319_070 Hb_004319_070 Hb_009486_160--Hb_004319_070 Hb_000363_120 Hb_000363_120 Hb_009486_160--Hb_000363_120 Hb_004899_040 Hb_004899_040 Hb_009486_160--Hb_004899_040 Hb_000699_210 Hb_000699_210 Hb_001488_040--Hb_000699_210 Hb_001488_040--Hb_009486_160 Hb_001427_150 Hb_001427_150 Hb_001488_040--Hb_001427_150 Hb_001488_040--Hb_011249_060 Hb_005765_040 Hb_005765_040 Hb_001488_040--Hb_005765_040 Hb_116349_130 Hb_116349_130 Hb_000926_150--Hb_116349_130 Hb_000035_100 Hb_000035_100 Hb_000926_150--Hb_000035_100 Hb_000856_300 Hb_000856_300 Hb_000926_150--Hb_000856_300 Hb_001257_100 Hb_001257_100 Hb_000926_150--Hb_001257_100 Hb_024650_080 Hb_024650_080 Hb_000926_150--Hb_024650_080 Hb_000373_170 Hb_000373_170 Hb_000926_150--Hb_000373_170 Hb_002812_010--Hb_001257_100 Hb_159295_010 Hb_159295_010 Hb_002812_010--Hb_159295_010 Hb_002812_010--Hb_000926_150 Hb_008948_140 Hb_008948_140 Hb_002812_010--Hb_008948_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.59177 22.6691 8.28248 8.15445 6.73157 5.20838
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.74287 7.25011 3.99863 10.87 7.73123

CAGE analysis