Hb_001862_140

Information

Type -
Description -
Location Contig1862: 137614-142094
Sequence    

Annotation

kegg
ID rcu:RCOM_1154780
description natural resistance-associated macrophage protein, putative
nr
ID XP_002524950.1
description natural resistance-associated macrophage protein, putative [Ricinus communis]
swissprot
ID Q9SNV9
description Metal transporter Nramp3 OS=Arabidopsis thaliana GN=NRAMP3 PE=2 SV=2
trembl
ID B9SG31
description Natural resistance-associated macrophage protein, putative OS=Ricinus communis GN=RCOM_1154780 PE=3 SV=1
Gene Ontology
ID GO:0016020
description metal transporter nramp3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18301: 137806-142156 , PASA_asmbl_18302: 137651-142156 , PASA_asmbl_18304: 139608-139969
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001862_140 0.0 - - natural resistance-associated macrophage protein, putative [Ricinus communis]
2 Hb_002391_290 0.0640974546 - - PREDICTED: bifunctional nuclease 2 isoform X1 [Jatropha curcas]
3 Hb_000110_190 0.0712983923 - - hypothetical protein B456_013G081300 [Gossypium raimondii]
4 Hb_000004_030 0.0760378101 - - PREDICTED: Niemann-Pick C1 protein [Jatropha curcas]
5 Hb_001677_080 0.082460822 - - mannose-1-phosphate guanyltransferase, putative [Ricinus communis]
6 Hb_000990_090 0.0985843596 - - PREDICTED: ER membrane protein complex subunit 1 [Jatropha curcas]
7 Hb_012340_070 0.0990167845 - - Gamma-secretase subunit APH1-like family protein [Populus trichocarpa]
8 Hb_000345_360 0.1028511937 - - PREDICTED: protein AUXIN RESPONSE 4 [Jatropha curcas]
9 Hb_000264_350 0.1046576203 - - PREDICTED: uncharacterized protein LOC105649541 [Jatropha curcas]
10 Hb_000022_020 0.1050253258 - - hypothetical protein CICLE_v10020565mg [Citrus clementina]
11 Hb_041828_010 0.1058720973 - - PREDICTED: alpha-mannosidase [Jatropha curcas]
12 Hb_002284_250 0.1059062031 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
13 Hb_000960_040 0.1073802438 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1B-like [Vitis vinifera]
14 Hb_004659_020 0.1093705757 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
15 Hb_000872_010 0.1102253775 - - PREDICTED: putative ubiquitin-conjugating enzyme E2 38 [Jatropha curcas]
16 Hb_001195_470 0.1106079554 - - PREDICTED: uncharacterized membrane protein At1g75140 [Jatropha curcas]
17 Hb_000238_030 0.1139158962 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_001821_150 0.1144679418 - - PREDICTED: potassium transporter 7-like [Jatropha curcas]
19 Hb_000362_150 0.1149526789 - - PREDICTED: homogentisate 1,2-dioxygenase [Jatropha curcas]
20 Hb_000284_120 0.1154771613 - - PREDICTED: uncharacterized protein LOC105629656 [Jatropha curcas]

Gene co-expression network

sample Hb_001862_140 Hb_001862_140 Hb_002391_290 Hb_002391_290 Hb_001862_140--Hb_002391_290 Hb_000110_190 Hb_000110_190 Hb_001862_140--Hb_000110_190 Hb_000004_030 Hb_000004_030 Hb_001862_140--Hb_000004_030 Hb_001677_080 Hb_001677_080 Hb_001862_140--Hb_001677_080 Hb_000990_090 Hb_000990_090 Hb_001862_140--Hb_000990_090 Hb_012340_070 Hb_012340_070 Hb_001862_140--Hb_012340_070 Hb_002391_290--Hb_000990_090 Hb_002391_290--Hb_000004_030 Hb_002391_290--Hb_000110_190 Hb_000345_360 Hb_000345_360 Hb_002391_290--Hb_000345_360 Hb_002391_290--Hb_001677_080 Hb_000872_010 Hb_000872_010 Hb_000110_190--Hb_000872_010 Hb_002968_080 Hb_002968_080 Hb_000110_190--Hb_002968_080 Hb_000592_030 Hb_000592_030 Hb_000110_190--Hb_000592_030 Hb_056691_060 Hb_056691_060 Hb_000110_190--Hb_056691_060 Hb_000264_350 Hb_000264_350 Hb_000004_030--Hb_000264_350 Hb_000960_040 Hb_000960_040 Hb_000004_030--Hb_000960_040 Hb_041828_010 Hb_041828_010 Hb_000004_030--Hb_041828_010 Hb_004659_020 Hb_004659_020 Hb_000004_030--Hb_004659_020 Hb_001492_020 Hb_001492_020 Hb_001677_080--Hb_001492_020 Hb_002828_020 Hb_002828_020 Hb_001677_080--Hb_002828_020 Hb_002235_170 Hb_002235_170 Hb_001677_080--Hb_002235_170 Hb_001677_080--Hb_012340_070 Hb_000990_090--Hb_000345_360 Hb_009529_030 Hb_009529_030 Hb_000990_090--Hb_009529_030 Hb_000785_040 Hb_000785_040 Hb_000990_090--Hb_000785_040 Hb_004875_030 Hb_004875_030 Hb_000990_090--Hb_004875_030 Hb_004545_090 Hb_004545_090 Hb_000990_090--Hb_004545_090 Hb_000004_020 Hb_000004_020 Hb_012340_070--Hb_000004_020 Hb_000022_020 Hb_000022_020 Hb_012340_070--Hb_000022_020 Hb_000056_130 Hb_000056_130 Hb_012340_070--Hb_000056_130 Hb_012340_070--Hb_002391_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.7538 16.004 15.4509 37.334 25.2034 36.7018
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.2665 5.55554 18.5518 34.182 29.2467

CAGE analysis