Hb_001862_160

Information

Type -
Description -
Location Contig1862: 194101-196093
Sequence    

Annotation

kegg
ID rcu:RCOM_1154750
description Indole-3-acetic acid-amido synthetase GH3.3, putative
nr
ID XP_012079335.1
description PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1 [Jatropha curcas]
swissprot
ID O82333
description Probable indole-3-acetic acid-amido synthetase GH3.1 OS=Arabidopsis thaliana GN=GH3.1 PE=2 SV=1
trembl
ID A0A067K6Z9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12482 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18305: 193836-196050
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001862_160 0.0 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1 [Jatropha curcas]
2 Hb_000979_070 0.1183535015 - - PREDICTED: endoglucanase 8-like [Jatropha curcas]
3 Hb_004096_010 0.1184045414 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 40 [Jatropha curcas]
4 Hb_001269_120 0.1249124468 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF003-like [Jatropha curcas]
5 Hb_151094_020 0.1336564408 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Prunus mume]
6 Hb_000438_030 0.1377616609 - - -
7 Hb_147060_010 0.1392083202 - - PREDICTED: probable glutathione S-transferase parC [Populus euphratica]
8 Hb_010812_130 0.1401225065 - - PREDICTED: hydroxyacylglutathione hydrolase cytoplasmic [Jatropha curcas]
9 Hb_001005_170 0.142846628 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
10 Hb_185666_010 0.1457053964 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 3 [Jatropha curcas]
11 Hb_001006_050 0.1485636965 - - PREDICTED: uncharacterized protein LOC101777526 [Setaria italica]
12 Hb_072997_010 0.150027866 - - hypothetical protein JCGZ_18743 [Jatropha curcas]
13 Hb_046615_040 0.150101325 - - unnamed protein product [Vitis vinifera]
14 Hb_002081_190 0.1512999841 - - hypothetical protein EUGRSUZ_I010391, partial [Eucalyptus grandis]
15 Hb_008143_050 0.1515527303 - - PREDICTED: cytochrome P450 710A1-like [Jatropha curcas]
16 Hb_030736_030 0.1538111664 - - hypothetical protein VITISV_006651 [Vitis vinifera]
17 Hb_000094_230 0.1549776265 - - hypothetical protein JCGZ_04416 [Jatropha curcas]
18 Hb_135673_010 0.1555738296 - - Germin-like protein subfamily 1 member 6 precursor [Populus trichocarpa]
19 Hb_003010_050 0.1558332947 - - -
20 Hb_103452_010 0.1575603199 - - hypothetical protein VITISV_027174 [Vitis vinifera]

Gene co-expression network

sample Hb_001862_160 Hb_001862_160 Hb_000979_070 Hb_000979_070 Hb_001862_160--Hb_000979_070 Hb_004096_010 Hb_004096_010 Hb_001862_160--Hb_004096_010 Hb_001269_120 Hb_001269_120 Hb_001862_160--Hb_001269_120 Hb_151094_020 Hb_151094_020 Hb_001862_160--Hb_151094_020 Hb_000438_030 Hb_000438_030 Hb_001862_160--Hb_000438_030 Hb_147060_010 Hb_147060_010 Hb_001862_160--Hb_147060_010 Hb_000094_230 Hb_000094_230 Hb_000979_070--Hb_000094_230 Hb_185666_010 Hb_185666_010 Hb_000979_070--Hb_185666_010 Hb_000535_040 Hb_000535_040 Hb_000979_070--Hb_000535_040 Hb_020025_030 Hb_020025_030 Hb_000979_070--Hb_020025_030 Hb_000140_200 Hb_000140_200 Hb_000979_070--Hb_000140_200 Hb_010598_010 Hb_010598_010 Hb_004096_010--Hb_010598_010 Hb_072997_010 Hb_072997_010 Hb_004096_010--Hb_072997_010 Hb_004096_010--Hb_001269_120 Hb_055440_010 Hb_055440_010 Hb_004096_010--Hb_055440_010 Hb_009767_030 Hb_009767_030 Hb_004096_010--Hb_009767_030 Hb_001269_120--Hb_000979_070 Hb_001269_120--Hb_055440_010 Hb_001269_120--Hb_072997_010 Hb_009535_010 Hb_009535_010 Hb_001269_120--Hb_009535_010 Hb_151094_020--Hb_147060_010 Hb_010812_130 Hb_010812_130 Hb_151094_020--Hb_010812_130 Hb_001006_050 Hb_001006_050 Hb_151094_020--Hb_001006_050 Hb_151094_020--Hb_000438_030 Hb_135673_010 Hb_135673_010 Hb_151094_020--Hb_135673_010 Hb_103452_010 Hb_103452_010 Hb_151094_020--Hb_103452_010 Hb_000438_030--Hb_147060_010 Hb_000438_030--Hb_010812_130 Hb_046615_040 Hb_046615_040 Hb_000438_030--Hb_046615_040 Hb_003010_050 Hb_003010_050 Hb_000438_030--Hb_003010_050 Hb_005306_060 Hb_005306_060 Hb_000438_030--Hb_005306_060 Hb_147060_010--Hb_010812_130 Hb_147060_010--Hb_046615_040 Hb_147060_010--Hb_003010_050 Hb_147060_010--Hb_005306_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.227831 2.77813 1.98466 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.62086 0

CAGE analysis