Hb_001862_210

Information

Type -
Description -
Location Contig1862: 252745-255637
Sequence    

Annotation

kegg
ID cit:102624883
description salutaridine reductase-like
nr
ID XP_006477446.1
description PREDICTED: LOW QUALITY PROTEIN: salutaridine reductase-like [Citrus sinensis]
swissprot
ID Q9M2E2
description (+)-neomenthol dehydrogenase OS=Arabidopsis thaliana GN=SDR1 PE=1 SV=1
trembl
ID D1MI43
description Broad substrate reductase/dehydrogenase OS=Artemisia annua GN=RED1 PE=2 SV=1
Gene Ontology
ID GO:0008152
description (+)-neomenthol dehydrogenase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18314: 253378-255342 , PASA_asmbl_18316: 254550-255557
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001862_210 0.0 - - PREDICTED: LOW QUALITY PROTEIN: salutaridine reductase-like [Citrus sinensis]
2 Hb_001723_020 0.0776530477 - - PREDICTED: nuclear export mediator factor Nemf [Jatropha curcas]
3 Hb_002890_290 0.0793642146 - - PREDICTED: outer envelope protein 64, mitochondrial [Jatropha curcas]
4 Hb_000340_400 0.0816681066 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
5 Hb_142368_010 0.0845706442 - - mRNA (guanine-7-)methyltransferase, putative [Ricinus communis]
6 Hb_004837_180 0.0853244241 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
7 Hb_000069_380 0.0870714656 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]
8 Hb_000617_230 0.0876956955 - - PREDICTED: tafazzin isoform X1 [Jatropha curcas]
9 Hb_001235_150 0.0878110078 - - PREDICTED: chaperone protein dnaJ 13 isoform X1 [Jatropha curcas]
10 Hb_001789_060 0.0880791199 - - calmodulin-binding heat-shock protein, putative [Ricinus communis]
11 Hb_003030_060 0.0881900727 - - PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 2-like [Jatropha curcas]
12 Hb_000010_190 0.0894933248 - - PREDICTED: protein-L-isoaspartate O-methyltransferase 1 isoform X2 [Jatropha curcas]
13 Hb_003001_080 0.0895601957 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
14 Hb_006478_040 0.0899199611 - - PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial [Jatropha curcas]
15 Hb_001279_170 0.0912002501 - - PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Jatropha curcas]
16 Hb_002006_030 0.0921840607 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER [Jatropha curcas]
17 Hb_001359_050 0.0928021929 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002445_100 0.09288469 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 5 isoform X2 [Jatropha curcas]
19 Hb_003464_090 0.0932222621 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
20 Hb_000025_410 0.094421091 - - PREDICTED: pentatricopeptide repeat-containing protein At5g01110-like [Populus euphratica]

Gene co-expression network

sample Hb_001862_210 Hb_001862_210 Hb_001723_020 Hb_001723_020 Hb_001862_210--Hb_001723_020 Hb_002890_290 Hb_002890_290 Hb_001862_210--Hb_002890_290 Hb_000340_400 Hb_000340_400 Hb_001862_210--Hb_000340_400 Hb_142368_010 Hb_142368_010 Hb_001862_210--Hb_142368_010 Hb_004837_180 Hb_004837_180 Hb_001862_210--Hb_004837_180 Hb_000069_380 Hb_000069_380 Hb_001862_210--Hb_000069_380 Hb_007765_110 Hb_007765_110 Hb_001723_020--Hb_007765_110 Hb_001723_020--Hb_000340_400 Hb_007035_050 Hb_007035_050 Hb_001723_020--Hb_007035_050 Hb_003464_090 Hb_003464_090 Hb_001723_020--Hb_003464_090 Hb_001723_020--Hb_002890_290 Hb_001227_030 Hb_001227_030 Hb_002890_290--Hb_001227_030 Hb_005489_020 Hb_005489_020 Hb_002890_290--Hb_005489_020 Hb_000331_680 Hb_000331_680 Hb_002890_290--Hb_000331_680 Hb_000025_410 Hb_000025_410 Hb_002890_290--Hb_000025_410 Hb_152175_010 Hb_152175_010 Hb_002890_290--Hb_152175_010 Hb_002890_290--Hb_003464_090 Hb_000340_400--Hb_004837_180 Hb_005116_060 Hb_005116_060 Hb_000340_400--Hb_005116_060 Hb_003001_080 Hb_003001_080 Hb_000340_400--Hb_003001_080 Hb_006478_040 Hb_006478_040 Hb_000340_400--Hb_006478_040 Hb_000340_400--Hb_007035_050 Hb_001359_050 Hb_001359_050 Hb_000340_400--Hb_001359_050 Hb_021576_100 Hb_021576_100 Hb_142368_010--Hb_021576_100 Hb_142368_010--Hb_152175_010 Hb_142368_010--Hb_003001_080 Hb_142368_010--Hb_001227_030 Hb_005137_050 Hb_005137_050 Hb_142368_010--Hb_005137_050 Hb_005867_070 Hb_005867_070 Hb_004837_180--Hb_005867_070 Hb_007590_020 Hb_007590_020 Hb_004837_180--Hb_007590_020 Hb_003929_280 Hb_003929_280 Hb_004837_180--Hb_003929_280 Hb_001225_040 Hb_001225_040 Hb_004837_180--Hb_001225_040 Hb_002217_110 Hb_002217_110 Hb_004837_180--Hb_002217_110 Hb_004236_050 Hb_004236_050 Hb_004837_180--Hb_004236_050 Hb_006059_040 Hb_006059_040 Hb_000069_380--Hb_006059_040 Hb_000708_030 Hb_000708_030 Hb_000069_380--Hb_000708_030 Hb_000699_030 Hb_000699_030 Hb_000069_380--Hb_000699_030 Hb_000069_380--Hb_001225_040 Hb_010368_010 Hb_010368_010 Hb_000069_380--Hb_010368_010 Hb_001699_220 Hb_001699_220 Hb_000069_380--Hb_001699_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.8678 23.2803 22.941 9.40175 13.8531 13.149
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.1293 21.5632 15.1694 22.6964 16.6556

CAGE analysis