Hb_001863_010

Information

Type -
Description -
Location Contig1863: 9983-10408
Sequence    

Annotation

kegg
ID rcu:RCOM_1037520
description protein binding protein, putative
nr
ID XP_012067929.1
description PREDICTED: classical arabinogalactan protein 4-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KYZ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15833 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 037_K23.ab1: 9835-10524

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001863_010 0.0 - - PREDICTED: classical arabinogalactan protein 4-like [Jatropha curcas]
2 Hb_116647_010 0.1154928154 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001524_120 0.134023063 - - myo-inositol-1 phosphate synthase [Hevea brasiliensis]
4 Hb_000260_380 0.1372363872 - - PREDICTED: cell division control protein 2 homolog C [Jatropha curcas]
5 Hb_003228_050 0.1380037091 - - chromomethylase [Hevea brasiliensis]
6 Hb_000431_100 0.1398492581 - - ribonucleoside-diphosphate reductase small chain, putative [Ricinus communis]
7 Hb_003050_020 0.1407414194 - - glycosyl hydrolase family 17 family protein [Populus trichocarpa]
8 Hb_001823_090 0.1409240354 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002030_130 0.1438812356 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
10 Hb_003813_090 0.1445427804 - - PREDICTED: uncharacterized protein LOC105638743 [Jatropha curcas]
11 Hb_000020_050 0.1454612402 - - PREDICTED: expansin-A6 [Jatropha curcas]
12 Hb_000735_060 0.1457092137 - - PREDICTED: U-box domain-containing protein 9 [Jatropha curcas]
13 Hb_001348_100 0.1469624608 - - PREDICTED: uncharacterized protein LOC105638934 [Jatropha curcas]
14 Hb_003935_040 0.1473481345 transcription factor TF Family: MIKC PREDICTED: MADS-box protein SVP [Jatropha curcas]
15 Hb_003055_090 0.1475984001 - - PREDICTED: uncharacterized protein LOC105649490 [Jatropha curcas]
16 Hb_005568_020 0.1496795104 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1 [Jatropha curcas]
17 Hb_012518_080 0.1500054782 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like [Jatropha curcas]
18 Hb_000735_020 0.1521505329 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
19 Hb_006693_010 0.1538352429 - - PREDICTED: uncharacterized protein LOC105628875 [Jatropha curcas]
20 Hb_002045_010 0.1541798198 - - PREDICTED: F-box/LRR-repeat protein 17 [Jatropha curcas]

Gene co-expression network

sample Hb_001863_010 Hb_001863_010 Hb_116647_010 Hb_116647_010 Hb_001863_010--Hb_116647_010 Hb_001524_120 Hb_001524_120 Hb_001863_010--Hb_001524_120 Hb_000260_380 Hb_000260_380 Hb_001863_010--Hb_000260_380 Hb_003228_050 Hb_003228_050 Hb_001863_010--Hb_003228_050 Hb_000431_100 Hb_000431_100 Hb_001863_010--Hb_000431_100 Hb_003050_020 Hb_003050_020 Hb_001863_010--Hb_003050_020 Hb_005568_020 Hb_005568_020 Hb_116647_010--Hb_005568_020 Hb_002027_430 Hb_002027_430 Hb_116647_010--Hb_002027_430 Hb_000735_020 Hb_000735_020 Hb_116647_010--Hb_000735_020 Hb_064546_010 Hb_064546_010 Hb_116647_010--Hb_064546_010 Hb_001085_190 Hb_001085_190 Hb_116647_010--Hb_001085_190 Hb_001524_120--Hb_000431_100 Hb_003360_010 Hb_003360_010 Hb_001524_120--Hb_003360_010 Hb_003813_090 Hb_003813_090 Hb_001524_120--Hb_003813_090 Hb_005183_150 Hb_005183_150 Hb_001524_120--Hb_005183_150 Hb_024682_030 Hb_024682_030 Hb_001524_120--Hb_024682_030 Hb_001524_120--Hb_003228_050 Hb_000297_210 Hb_000297_210 Hb_000260_380--Hb_000297_210 Hb_005542_150 Hb_005542_150 Hb_000260_380--Hb_005542_150 Hb_001348_100 Hb_001348_100 Hb_000260_380--Hb_001348_100 Hb_001999_160 Hb_001999_160 Hb_000260_380--Hb_001999_160 Hb_003666_070 Hb_003666_070 Hb_000260_380--Hb_003666_070 Hb_000638_240 Hb_000638_240 Hb_000260_380--Hb_000638_240 Hb_002030_130 Hb_002030_130 Hb_003228_050--Hb_002030_130 Hb_007632_210 Hb_007632_210 Hb_003228_050--Hb_007632_210 Hb_124677_050 Hb_124677_050 Hb_003228_050--Hb_124677_050 Hb_101133_050 Hb_101133_050 Hb_003228_050--Hb_101133_050 Hb_000956_050 Hb_000956_050 Hb_003228_050--Hb_000956_050 Hb_000431_100--Hb_003360_010 Hb_000431_100--Hb_024682_030 Hb_002276_250 Hb_002276_250 Hb_000431_100--Hb_002276_250 Hb_000431_100--Hb_001348_100 Hb_000046_240 Hb_000046_240 Hb_000431_100--Hb_000046_240 Hb_000907_160 Hb_000907_160 Hb_003050_020--Hb_000907_160 Hb_003050_020--Hb_000735_020 Hb_003050_020--Hb_116647_010 Hb_000003_280 Hb_000003_280 Hb_003050_020--Hb_000003_280 Hb_000959_320 Hb_000959_320 Hb_003050_020--Hb_000959_320 Hb_007811_020 Hb_007811_020 Hb_003050_020--Hb_007811_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.44987 2.78759 36.9631 42.5043 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.12515 2.64289 0.453572 9.25564 14.2185

CAGE analysis