Hb_001863_070

Information

Type -
Description -
Location Contig1863: 39452-46975
Sequence    

Annotation

kegg
ID tcc:TCM_034847
description Queuine tRNA-ribosyltransferase
nr
ID XP_007018701.1
description Queuine tRNA-ribosyltransferase [Theobroma cacao]
swissprot
ID Q28HC6
description Queuine tRNA-ribosyltransferase OS=Xenopus tropicalis GN=qtrt1 PE=2 SV=2
trembl
ID A0A061FFS9
description Queuine tRNA-ribosyltransferase OS=Theobroma cacao GN=TCM_034847 PE=3 SV=1
Gene Ontology
ID GO:0008479
description queuine trna-ribosyltransferase-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18322: 39482-47081 , PASA_asmbl_18323: 43761-46962 , PASA_asmbl_18324: 43761-46962
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001863_070 0.0 - - Queuine tRNA-ribosyltransferase [Theobroma cacao]
2 Hb_011242_050 0.1031165266 - - PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa [Jatropha curcas]
3 Hb_003602_060 0.107494376 - - PREDICTED: phosphoglycerate mutase-like protein 1 [Jatropha curcas]
4 Hb_002027_440 0.1097096445 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000800_020 0.114398192 - - PREDICTED: 3-phosphoinositide-dependent protein kinase 2 [Jatropha curcas]
6 Hb_013405_070 0.116428121 - - ferric-chelate reductase, putative [Ricinus communis]
7 Hb_001322_230 0.1199854808 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Populus euphratica]
8 Hb_000560_040 0.121351192 - - PREDICTED: membrane-associated 30 kDa protein, chloroplastic [Jatropha curcas]
9 Hb_000375_300 0.1257361652 - - PREDICTED: cyanate hydratase [Jatropha curcas]
10 Hb_002016_140 0.126264821 - - PREDICTED: probable E3 ubiquitin-protein ligase BAH1-like 1 [Jatropha curcas]
11 Hb_093458_010 0.1275614508 - - hypothetical protein CISIN_1g0277592mg [Citrus sinensis]
12 Hb_001619_060 0.1281013405 - - PREDICTED: uncharacterized methyltransferase At1g78140, chloroplastic [Jatropha curcas]
13 Hb_001009_140 0.1306343129 - - hypothetical protein JCGZ_11337 [Jatropha curcas]
14 Hb_001329_070 0.131078134 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
15 Hb_005883_080 0.1312371447 - - type 2A protein phosphatase-2 [Populus trichocarpa]
16 Hb_015807_160 0.132820889 - - PREDICTED: probable histone H2A.1 [Jatropha curcas]
17 Hb_000206_230 0.1356003317 - - conserved hypothetical protein [Ricinus communis]
18 Hb_006588_190 0.1357485368 - - PREDICTED: ataxin-3 homolog [Jatropha curcas]
19 Hb_000566_010 0.1380537233 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
20 Hb_027506_040 0.1397609313 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001863_070 Hb_001863_070 Hb_011242_050 Hb_011242_050 Hb_001863_070--Hb_011242_050 Hb_003602_060 Hb_003602_060 Hb_001863_070--Hb_003602_060 Hb_002027_440 Hb_002027_440 Hb_001863_070--Hb_002027_440 Hb_000800_020 Hb_000800_020 Hb_001863_070--Hb_000800_020 Hb_013405_070 Hb_013405_070 Hb_001863_070--Hb_013405_070 Hb_001322_230 Hb_001322_230 Hb_001863_070--Hb_001322_230 Hb_011242_050--Hb_002027_440 Hb_001329_070 Hb_001329_070 Hb_011242_050--Hb_001329_070 Hb_000206_230 Hb_000206_230 Hb_011242_050--Hb_000206_230 Hb_188281_030 Hb_188281_030 Hb_011242_050--Hb_188281_030 Hb_000345_460 Hb_000345_460 Hb_011242_050--Hb_000345_460 Hb_154038_020 Hb_154038_020 Hb_003602_060--Hb_154038_020 Hb_093458_010 Hb_093458_010 Hb_003602_060--Hb_093458_010 Hb_027506_040 Hb_027506_040 Hb_003602_060--Hb_027506_040 Hb_007441_080 Hb_007441_080 Hb_003602_060--Hb_007441_080 Hb_002007_320 Hb_002007_320 Hb_003602_060--Hb_002007_320 Hb_002027_440--Hb_001329_070 Hb_002027_440--Hb_000345_460 Hb_002027_440--Hb_013405_070 Hb_002027_440--Hb_188281_030 Hb_006588_190 Hb_006588_190 Hb_000800_020--Hb_006588_190 Hb_000800_020--Hb_013405_070 Hb_011671_340 Hb_011671_340 Hb_000800_020--Hb_011671_340 Hb_005511_130 Hb_005511_130 Hb_000800_020--Hb_005511_130 Hb_011381_040 Hb_011381_040 Hb_000800_020--Hb_011381_040 Hb_000984_220 Hb_000984_220 Hb_000800_020--Hb_000984_220 Hb_013405_070--Hb_011671_340 Hb_008725_270 Hb_008725_270 Hb_013405_070--Hb_008725_270 Hb_001232_090 Hb_001232_090 Hb_013405_070--Hb_001232_090 Hb_000589_170 Hb_000589_170 Hb_013405_070--Hb_000589_170 Hb_003894_030 Hb_003894_030 Hb_013405_070--Hb_003894_030 Hb_000820_140 Hb_000820_140 Hb_001322_230--Hb_000820_140 Hb_002053_010 Hb_002053_010 Hb_001322_230--Hb_002053_010 Hb_001711_120 Hb_001711_120 Hb_001322_230--Hb_001711_120 Hb_001322_230--Hb_003602_060 Hb_000560_040 Hb_000560_040 Hb_001322_230--Hb_000560_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.449546 1.55767 4.52762 3.96762 0.356016 0.624508
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.781411 2.75512 0.643261 1.54373 3.2956

CAGE analysis