Hb_001863_080

Information

Type transcription factor
Description TF Family: HB
Location Contig1863: 49675-51421
Sequence    

Annotation

kegg
ID rcu:RCOM_1037430
description homeobox protein, putative
nr
ID XP_012067920.1
description PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Jatropha curcas]
swissprot
ID Q940J1
description Homeobox-leucine zipper protein ATHB-16 OS=Arabidopsis thaliana GN=ATHB-16 PE=2 SV=2
trembl
ID A0A067KYZ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15828 PE=4 SV=1
Gene Ontology
ID GO:0005634
description homeobox-leucine zipper protein athb-6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18325: 49880-51448
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001863_080 0.0 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Jatropha curcas]
2 Hb_000172_740 0.0714608281 - - HXXXD-type acyl-transferase family protein, putative [Theobroma cacao]
3 Hb_188923_010 0.0934709468 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
4 Hb_000286_030 0.1075767203 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
5 Hb_003058_180 0.1137080937 transcription factor TF Family: HSF hypothetical protein POPTR_0001s28040g [Populus trichocarpa]
6 Hb_150084_010 0.114667351 - - PREDICTED: premnaspirodiene oxygenase-like [Vitis vinifera]
7 Hb_000487_140 0.1154544061 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
8 Hb_003787_060 0.1182331507 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
9 Hb_012807_140 0.1207278107 transcription factor TF Family: MYB hypothetical protein POPTR_0009s01270g [Populus trichocarpa]
10 Hb_003805_080 0.1207916522 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
11 Hb_004712_020 0.1230044044 - - hypothetical protein JCGZ_00782 [Jatropha curcas]
12 Hb_000967_010 0.1257365058 - - hypothetical protein JCGZ_08336 [Jatropha curcas]
13 Hb_000230_160 0.1286188671 - - PREDICTED: uncharacterized protein LOC105631858 isoform X1 [Jatropha curcas]
14 Hb_003435_070 0.1303118533 - - PREDICTED: probable pectate lyase 12 isoform X3 [Jatropha curcas]
15 Hb_184942_010 0.1320265697 - - STS14 protein precursor, putative [Ricinus communis]
16 Hb_001158_080 0.1387692899 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
17 Hb_002900_040 0.1399633113 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like [Populus euphratica]
18 Hb_006120_010 0.14371737 - - invertase inhibitor [Manihot esculenta]
19 Hb_002870_010 0.1445506568 - - PREDICTED: uncharacterized protein LOC105649339 [Jatropha curcas]
20 Hb_000963_010 0.1446593225 - - PREDICTED: aquaporin PIP2-4 [Jatropha curcas]

Gene co-expression network

sample Hb_001863_080 Hb_001863_080 Hb_000172_740 Hb_000172_740 Hb_001863_080--Hb_000172_740 Hb_188923_010 Hb_188923_010 Hb_001863_080--Hb_188923_010 Hb_000286_030 Hb_000286_030 Hb_001863_080--Hb_000286_030 Hb_003058_180 Hb_003058_180 Hb_001863_080--Hb_003058_180 Hb_150084_010 Hb_150084_010 Hb_001863_080--Hb_150084_010 Hb_000487_140 Hb_000487_140 Hb_001863_080--Hb_000487_140 Hb_000172_740--Hb_150084_010 Hb_000172_740--Hb_000286_030 Hb_000172_740--Hb_188923_010 Hb_003805_080 Hb_003805_080 Hb_000172_740--Hb_003805_080 Hb_000230_160 Hb_000230_160 Hb_000172_740--Hb_000230_160 Hb_000967_010 Hb_000967_010 Hb_188923_010--Hb_000967_010 Hb_188923_010--Hb_003805_080 Hb_003787_060 Hb_003787_060 Hb_188923_010--Hb_003787_060 Hb_188923_010--Hb_003058_180 Hb_118707_020 Hb_118707_020 Hb_188923_010--Hb_118707_020 Hb_000081_030 Hb_000081_030 Hb_000286_030--Hb_000081_030 Hb_000286_030--Hb_000230_160 Hb_001856_150 Hb_001856_150 Hb_000286_030--Hb_001856_150 Hb_006314_020 Hb_006314_020 Hb_000286_030--Hb_006314_020 Hb_003058_180--Hb_000230_160 Hb_006120_010 Hb_006120_010 Hb_003058_180--Hb_006120_010 Hb_003058_180--Hb_001856_150 Hb_003058_180--Hb_003805_080 Hb_003058_180--Hb_000487_140 Hb_002333_010 Hb_002333_010 Hb_150084_010--Hb_002333_010 Hb_000963_010 Hb_000963_010 Hb_150084_010--Hb_000963_010 Hb_184942_010 Hb_184942_010 Hb_150084_010--Hb_184942_010 Hb_172633_020 Hb_172633_020 Hb_150084_010--Hb_172633_020 Hb_002042_160 Hb_002042_160 Hb_150084_010--Hb_002042_160 Hb_000487_140--Hb_003805_080 Hb_000487_140--Hb_006120_010 Hb_000761_030 Hb_000761_030 Hb_000487_140--Hb_000761_030 Hb_000487_140--Hb_188923_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 8.79623 0.545033 18.7192 0 0.0941985
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0236611 0 34.467 4.75843

CAGE analysis