Hb_001863_110

Information

Type -
Description -
Location Contig1863: 75545-81022
Sequence    

Annotation

kegg
ID rcu:RCOM_1037260
description hypothetical protein
nr
ID XP_012067917.1
description PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
swissprot
ID Q8W486
description Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=2 SV=1
trembl
ID B9RJP4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1037260 PE=4 SV=1
Gene Ontology
ID GO:0016757
description o-fucosyltransferase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18330: 75604-80894 , PASA_asmbl_18331: 75991-76096
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001863_110 0.0 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
2 Hb_000034_050 0.0641774873 - - PREDICTED: uncharacterized protein LOC105637912 [Jatropha curcas]
3 Hb_000335_010 0.0707981979 - - WD-repeat protein, putative [Ricinus communis]
4 Hb_003581_120 0.0728675829 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
5 Hb_010222_030 0.0749742752 - - PREDICTED: uncharacterized protein LOC105647641 [Jatropha curcas]
6 Hb_002400_180 0.0754186407 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002174_060 0.0789241861 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
8 Hb_003363_010 0.0801383683 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003006_060 0.080892929 - - PREDICTED: pre-mRNA-splicing factor syf2 [Jatropha curcas]
10 Hb_003434_060 0.0827325572 - - PREDICTED: membrane-bound transcription factor site-2 protease homolog isoform X1 [Jatropha curcas]
11 Hb_001584_290 0.0846181776 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
12 Hb_000300_580 0.0863424814 - - PREDICTED: importin-5-like [Jatropha curcas]
13 Hb_009265_080 0.086390605 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
14 Hb_000640_320 0.0868839268 - - PREDICTED: uncharacterized protein LOC105642644 isoform X2 [Jatropha curcas]
15 Hb_008143_030 0.087251961 - - PREDICTED: uncharacterized protein LOC105650295 isoform X2 [Jatropha curcas]
16 Hb_015763_030 0.0881091811 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000364_060 0.0882490782 - - JHL03K20.4 [Jatropha curcas]
18 Hb_004195_280 0.0899021835 - - PREDICTED: CDK5RAP1-like protein [Jatropha curcas]
19 Hb_002716_140 0.0901716917 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
20 Hb_004881_050 0.0904966915 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001863_110 Hb_001863_110 Hb_000034_050 Hb_000034_050 Hb_001863_110--Hb_000034_050 Hb_000335_010 Hb_000335_010 Hb_001863_110--Hb_000335_010 Hb_003581_120 Hb_003581_120 Hb_001863_110--Hb_003581_120 Hb_010222_030 Hb_010222_030 Hb_001863_110--Hb_010222_030 Hb_002400_180 Hb_002400_180 Hb_001863_110--Hb_002400_180 Hb_002174_060 Hb_002174_060 Hb_001863_110--Hb_002174_060 Hb_000034_050--Hb_002400_180 Hb_000322_100 Hb_000322_100 Hb_000034_050--Hb_000322_100 Hb_009265_080 Hb_009265_080 Hb_000034_050--Hb_009265_080 Hb_000034_050--Hb_003581_120 Hb_000390_060 Hb_000390_060 Hb_000034_050--Hb_000390_060 Hb_031754_010 Hb_031754_010 Hb_000335_010--Hb_031754_010 Hb_000457_060 Hb_000457_060 Hb_000335_010--Hb_000457_060 Hb_000789_080 Hb_000789_080 Hb_000335_010--Hb_000789_080 Hb_001437_100 Hb_001437_100 Hb_000335_010--Hb_001437_100 Hb_002043_170 Hb_002043_170 Hb_000335_010--Hb_002043_170 Hb_002883_010 Hb_002883_010 Hb_000335_010--Hb_002883_010 Hb_003581_120--Hb_002400_180 Hb_008695_120 Hb_008695_120 Hb_003581_120--Hb_008695_120 Hb_002097_090 Hb_002097_090 Hb_003581_120--Hb_002097_090 Hb_000803_300 Hb_000803_300 Hb_003581_120--Hb_000803_300 Hb_001019_170 Hb_001019_170 Hb_003581_120--Hb_001019_170 Hb_024714_020 Hb_024714_020 Hb_010222_030--Hb_024714_020 Hb_010222_030--Hb_000034_050 Hb_000230_330 Hb_000230_330 Hb_010222_030--Hb_000230_330 Hb_010222_080 Hb_010222_080 Hb_010222_030--Hb_010222_080 Hb_001584_290 Hb_001584_290 Hb_010222_030--Hb_001584_290 Hb_000684_420 Hb_000684_420 Hb_002400_180--Hb_000684_420 Hb_004678_060 Hb_004678_060 Hb_002400_180--Hb_004678_060 Hb_002400_180--Hb_000803_300 Hb_002400_180--Hb_002097_090 Hb_004195_280 Hb_004195_280 Hb_002174_060--Hb_004195_280 Hb_000179_020 Hb_000179_020 Hb_002174_060--Hb_000179_020 Hb_000364_060 Hb_000364_060 Hb_002174_060--Hb_000364_060 Hb_010423_020 Hb_010423_020 Hb_002174_060--Hb_010423_020 Hb_001866_110 Hb_001866_110 Hb_002174_060--Hb_001866_110 Hb_000184_110 Hb_000184_110 Hb_002174_060--Hb_000184_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.4925 10.5791 7.27789 13.697 34.9431 40.2994
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.9762 12.1639 12.902 9.88554 11.7801

CAGE analysis