Hb_001863_120

Information

Type -
Description -
Location Contig1863: 83852-88075
Sequence    

Annotation

kegg
ID pop:POPTR_0002s10040g
description POPTRDRAFT_816363; seryl-tRNA synthetase family protein
nr
ID XP_012067914.1
description PREDICTED: serine--tRNA ligase, mitochondrial [Jatropha curcas]
swissprot
ID Q73KB2
description Serine--tRNA ligase OS=Treponema denticola (strain ATCC 35405 / CIP 103919 / DSM 14222) GN=serS PE=3 SV=1
trembl
ID A0A067KZ22
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15824 PE=3 SV=1
Gene Ontology
ID GO:0005739
description serine--trna mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 031_F12r.ab1: 88420-90208

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001863_120 0.0 - - PREDICTED: serine--tRNA ligase, mitochondrial [Jatropha curcas]
2 Hb_001541_110 0.0928709615 - - PREDICTED: sufE-like protein 2, chloroplastic isoform X2 [Jatropha curcas]
3 Hb_019053_060 0.0987793686 - - PREDICTED: uncharacterized protein LOC105632672 [Jatropha curcas]
4 Hb_027472_100 0.100433457 - - PREDICTED: uncharacterized protein LOC105646173 [Jatropha curcas]
5 Hb_001946_160 0.102833494 - - putative chaperon P13.9 [Castanea sativa]
6 Hb_009252_060 0.1032230634 - - PREDICTED: uncharacterized protein LOC105640395 [Jatropha curcas]
7 Hb_025194_060 0.1043429894 - - PREDICTED: photosynthetic NDH subunit of lumenal location 5, chloroplastic isoform X2 [Jatropha curcas]
8 Hb_000926_080 0.1120006204 - - PREDICTED: paraspeckle component 1 [Jatropha curcas]
9 Hb_001438_010 0.1152464107 - - PREDICTED: uncharacterized protein LOC105639111 isoform X1 [Jatropha curcas]
10 Hb_004440_060 0.120241612 - - aldose 1-epimerase, putative [Ricinus communis]
11 Hb_000035_240 0.1215911191 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001900_140 0.1217613759 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
13 Hb_005946_040 0.1218178594 - - PREDICTED: probable protein phosphatase 2C 22 isoform X2 [Jatropha curcas]
14 Hb_007199_020 0.1222482984 - - hypothetical protein CICLE_v10028570mg [Citrus clementina]
15 Hb_002986_090 0.1232902544 - - PREDICTED: methionine aminopeptidase 1D, chloroplastic/mitochondrial [Jatropha curcas]
16 Hb_005127_030 0.1233717876 - - PREDICTED: tryptophan--tRNA ligase, mitochondrial isoform X2 [Jatropha curcas]
17 Hb_001587_180 0.1245518559 - - PREDICTED: peptide methionine sulfoxide reductase B5-like [Jatropha curcas]
18 Hb_021650_040 0.1252224496 - - EG2771 [Manihot esculenta]
19 Hb_000976_190 0.1272529536 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
20 Hb_008695_200 0.1277264154 - - Protein grpE, putative [Ricinus communis]

Gene co-expression network

sample Hb_001863_120 Hb_001863_120 Hb_001541_110 Hb_001541_110 Hb_001863_120--Hb_001541_110 Hb_019053_060 Hb_019053_060 Hb_001863_120--Hb_019053_060 Hb_027472_100 Hb_027472_100 Hb_001863_120--Hb_027472_100 Hb_001946_160 Hb_001946_160 Hb_001863_120--Hb_001946_160 Hb_009252_060 Hb_009252_060 Hb_001863_120--Hb_009252_060 Hb_025194_060 Hb_025194_060 Hb_001863_120--Hb_025194_060 Hb_007451_040 Hb_007451_040 Hb_001541_110--Hb_007451_040 Hb_000003_780 Hb_000003_780 Hb_001541_110--Hb_000003_780 Hb_001587_180 Hb_001587_180 Hb_001541_110--Hb_001587_180 Hb_000413_060 Hb_000413_060 Hb_001541_110--Hb_000413_060 Hb_000926_080 Hb_000926_080 Hb_001541_110--Hb_000926_080 Hb_019053_060--Hb_009252_060 Hb_000487_260 Hb_000487_260 Hb_019053_060--Hb_000487_260 Hb_000173_250 Hb_000173_250 Hb_019053_060--Hb_000173_250 Hb_001935_100 Hb_001935_100 Hb_019053_060--Hb_001935_100 Hb_001410_070 Hb_001410_070 Hb_019053_060--Hb_001410_070 Hb_019053_060--Hb_001946_160 Hb_003038_100 Hb_003038_100 Hb_027472_100--Hb_003038_100 Hb_027472_100--Hb_001946_160 Hb_003813_020 Hb_003813_020 Hb_027472_100--Hb_003813_020 Hb_021650_040 Hb_021650_040 Hb_027472_100--Hb_021650_040 Hb_027472_100--Hb_009252_060 Hb_005276_010 Hb_005276_010 Hb_001946_160--Hb_005276_010 Hb_000941_100 Hb_000941_100 Hb_001946_160--Hb_000941_100 Hb_001946_160--Hb_025194_060 Hb_005127_030 Hb_005127_030 Hb_001946_160--Hb_005127_030 Hb_006538_120 Hb_006538_120 Hb_001946_160--Hb_006538_120 Hb_002053_010 Hb_002053_010 Hb_001946_160--Hb_002053_010 Hb_002893_110 Hb_002893_110 Hb_009252_060--Hb_002893_110 Hb_000390_090 Hb_000390_090 Hb_009252_060--Hb_000390_090 Hb_007416_050 Hb_007416_050 Hb_009252_060--Hb_007416_050 Hb_009252_060--Hb_000413_060 Hb_025194_060--Hb_021650_040 Hb_003304_030 Hb_003304_030 Hb_025194_060--Hb_003304_030 Hb_025194_060--Hb_019053_060 Hb_025194_060--Hb_005127_030 Hb_005539_010 Hb_005539_010 Hb_025194_060--Hb_005539_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.64336 1.78639 11.8931 3.88292 1.417 2.61697
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.53615 6.9357 2.48007 3.33992 11.0946

CAGE analysis