Hb_001863_130

Information

Type -
Description -
Location Contig1863: 88575-90056
Sequence    

Annotation

kegg
ID ppp:PHYPADRAFT_111893
description HTR1512; histone H3
nr
ID AFW86019.1
description hypothetical protein ZEAMMB73_433257, partial [Zea mays]
swissprot
ID Q71H73
description Histone H3.3 OS=Vitis vinifera PE=2 SV=3
trembl
ID A0A0E0L7C3
description Uncharacterized protein OS=Oryza punctata PE=4 SV=1
Gene Ontology
ID GO:0000786
description histone

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18333: 88365-90329 , PASA_asmbl_18334: 88399-90329 , PASA_asmbl_18335: 88880-89208
cDNA
(Sanger)
(ID:Location)		 003_E19.ab1: 88406-90285 , 013_N08.ab1: 88401-90144 , 014_P05.ab1: 88406-90284 , 037_P05.ab1: 88441-90304 , 047_J21.ab1: 88406-90208 , 051_K02.ab1: 88399-90180 , 053_M09.ab1: 88399-90235 , 053_P20.ab1: 88399-90227

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001863_130 0.0 - - hypothetical protein ZEAMMB73_433257, partial [Zea mays]
2 Hb_003582_070 0.1029193078 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002909_020 0.1036679259 - - PREDICTED: uncharacterized protein LOC105632476 [Jatropha curcas]
4 Hb_001511_260 0.1186649418 - - tryptophan biosynthesis protein, putative [Ricinus communis]
5 Hb_001377_450 0.1191177889 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 2 isoform X1 [Jatropha curcas]
6 Hb_001234_070 0.1198952901 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein Sgpp [Populus euphratica]
7 Hb_010560_030 0.1209024626 - - PREDICTED: mitochondrial pyruvate carrier 4-like [Jatropha curcas]
8 Hb_000327_380 0.1259628068 - - hypothetical protein JCGZ_06621 [Jatropha curcas]
9 Hb_003362_030 0.1275897194 - - hypothetical protein POPTR_0017s08440g [Populus trichocarpa]
10 Hb_003605_160 0.1292261521 - - PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]
11 Hb_002314_010 0.1295464026 - - hypothetical protein JCGZ_15712 [Jatropha curcas]
12 Hb_000086_140 0.1310796845 - - PREDICTED: probable arabinose 5-phosphate isomerase [Jatropha curcas]
13 Hb_004093_020 0.1320191524 - - Calcium-binding EF-hand family protein [Theobroma cacao]
14 Hb_000826_100 0.1333775544 - - PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 [Jatropha curcas]
15 Hb_002303_060 0.1346727114 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005460_060 0.1368515191 - - PREDICTED: proteasome assembly chaperone 2 [Jatropha curcas]
17 Hb_000832_190 0.1372337452 - - Rab3 [Hevea brasiliensis]
18 Hb_001322_070 0.1380409849 - - protein with unknown function [Ricinus communis]
19 Hb_004230_020 0.1386399231 - - PREDICTED: uncharacterized protein LOC105648105 [Jatropha curcas]
20 Hb_004984_030 0.1412584656 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_001863_130 Hb_001863_130 Hb_003582_070 Hb_003582_070 Hb_001863_130--Hb_003582_070 Hb_002909_020 Hb_002909_020 Hb_001863_130--Hb_002909_020 Hb_001511_260 Hb_001511_260 Hb_001863_130--Hb_001511_260 Hb_001377_450 Hb_001377_450 Hb_001863_130--Hb_001377_450 Hb_001234_070 Hb_001234_070 Hb_001863_130--Hb_001234_070 Hb_010560_030 Hb_010560_030 Hb_001863_130--Hb_010560_030 Hb_003582_070--Hb_001234_070 Hb_001188_030 Hb_001188_030 Hb_003582_070--Hb_001188_030 Hb_015299_030 Hb_015299_030 Hb_003582_070--Hb_015299_030 Hb_000193_110 Hb_000193_110 Hb_003582_070--Hb_000193_110 Hb_003362_030 Hb_003362_030 Hb_003582_070--Hb_003362_030 Hb_003126_130 Hb_003126_130 Hb_002909_020--Hb_003126_130 Hb_000832_190 Hb_000832_190 Hb_002909_020--Hb_000832_190 Hb_002909_020--Hb_001377_450 Hb_004984_030 Hb_004984_030 Hb_002909_020--Hb_004984_030 Hb_007741_130 Hb_007741_130 Hb_002909_020--Hb_007741_130 Hb_000803_200 Hb_000803_200 Hb_001511_260--Hb_000803_200 Hb_006326_040 Hb_006326_040 Hb_001511_260--Hb_006326_040 Hb_000392_340 Hb_000392_340 Hb_001511_260--Hb_000392_340 Hb_001511_260--Hb_000832_190 Hb_000359_150 Hb_000359_150 Hb_001511_260--Hb_000359_150 Hb_002303_060 Hb_002303_060 Hb_001511_260--Hb_002303_060 Hb_000429_040 Hb_000429_040 Hb_001377_450--Hb_000429_040 Hb_001377_450--Hb_000832_190 Hb_001377_450--Hb_015299_030 Hb_028396_010 Hb_028396_010 Hb_001377_450--Hb_028396_010 Hb_007894_170 Hb_007894_170 Hb_001377_450--Hb_007894_170 Hb_001073_080 Hb_001073_080 Hb_001377_450--Hb_001073_080 Hb_171900_060 Hb_171900_060 Hb_001234_070--Hb_171900_060 Hb_001234_070--Hb_000193_110 Hb_004041_020 Hb_004041_020 Hb_001234_070--Hb_004041_020 Hb_001234_070--Hb_003362_030 Hb_001234_070--Hb_000832_190 Hb_001053_140 Hb_001053_140 Hb_010560_030--Hb_001053_140 Hb_000327_380 Hb_000327_380 Hb_010560_030--Hb_000327_380 Hb_000189_240 Hb_000189_240 Hb_010560_030--Hb_000189_240 Hb_000302_140 Hb_000302_140 Hb_010560_030--Hb_000302_140 Hb_010560_030--Hb_002303_060 Hb_000087_130 Hb_000087_130 Hb_010560_030--Hb_000087_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
192.546 163.6 516.624 636.373 73.3595 133.167
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
562.266 725.242 358.051 103.113 228.101

CAGE analysis