Hb_001863_140

Information

Type -
Description -
Location Contig1863: 94239-97821
Sequence    

Annotation

kegg
ID rcu:RCOM_1037110
description cytochrome C oxidase polypeptide vib, putative (EC:1.9.3.1)
nr
ID XP_012067912.1
description PREDICTED: cytochrome c oxidase subunit 6b-1 [Jatropha curcas]
swissprot
ID Q9S7L9
description Cytochrome c oxidase subunit 6b-1 OS=Arabidopsis thaliana GN=COX6B-1 PE=1 SV=1
trembl
ID A0A067LA80
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15822 PE=4 SV=1
Gene Ontology
ID GO:0005739
description cytochrome c oxidase subunit 6b-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18337: 94295-97821
cDNA
(Sanger)
(ID:Location)		 053_B05.ab1: 96233-97805

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001863_140 0.0 - - PREDICTED: cytochrome c oxidase subunit 6b-1 [Jatropha curcas]
2 Hb_002110_160 0.0854142827 - - PREDICTED: phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic [Jatropha curcas]
3 Hb_006452_180 0.094034481 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
4 Hb_178968_060 0.0940965438 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
5 Hb_000230_460 0.0963449533 - - Speckle-type POZ protein, putative [Ricinus communis]
6 Hb_010775_030 0.0969713735 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
7 Hb_003687_120 0.0993781199 - - PREDICTED: serine/threonine-protein kinase tricorner-like [Jatropha curcas]
8 Hb_003470_040 0.099870123 - - PREDICTED: 2-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial [Jatropha curcas]
9 Hb_029695_080 0.1016703379 - - PREDICTED: NAD-dependent protein deacetylase SRT1 [Prunus mume]
10 Hb_033642_120 0.1051758649 - - PREDICTED: nucleolar GTP-binding protein 2 [Vitis vinifera]
11 Hb_005977_030 0.1074552035 - - PREDICTED: monothiol glutaredoxin-S10-like [Jatropha curcas]
12 Hb_010287_020 0.1092045635 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
13 Hb_001300_280 0.1092157175 - - PREDICTED: mitochondrial substrate carrier family protein ucpB [Jatropha curcas]
14 Hb_000868_120 0.1101802837 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 2 [Jatropha curcas]
15 Hb_000089_210 0.1111287326 - - unknown [Medicago truncatula]
16 Hb_001357_310 0.1119662983 - - PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [Jatropha curcas]
17 Hb_000120_890 0.1139933931 - - PREDICTED: phosphoinositide phosphatase SAC6 [Jatropha curcas]
18 Hb_002909_040 0.1143305228 desease resistance Gene Name: AAA PREDICTED: 26S protease regulatory subunit 6B homolog [Jatropha curcas]
19 Hb_004648_090 0.1145909724 - - peroxisomal biogenesis factor, putative [Ricinus communis]
20 Hb_000617_310 0.1146473217 - - PREDICTED: cell cycle checkpoint control protein RAD9A [Jatropha curcas]

Gene co-expression network

sample Hb_001863_140 Hb_001863_140 Hb_002110_160 Hb_002110_160 Hb_001863_140--Hb_002110_160 Hb_006452_180 Hb_006452_180 Hb_001863_140--Hb_006452_180 Hb_178968_060 Hb_178968_060 Hb_001863_140--Hb_178968_060 Hb_000230_460 Hb_000230_460 Hb_001863_140--Hb_000230_460 Hb_010775_030 Hb_010775_030 Hb_001863_140--Hb_010775_030 Hb_003687_120 Hb_003687_120 Hb_001863_140--Hb_003687_120 Hb_000282_090 Hb_000282_090 Hb_002110_160--Hb_000282_090 Hb_002110_160--Hb_010775_030 Hb_010287_020 Hb_010287_020 Hb_002110_160--Hb_010287_020 Hb_000207_200 Hb_000207_200 Hb_002110_160--Hb_000207_200 Hb_004870_050 Hb_004870_050 Hb_002110_160--Hb_004870_050 Hb_000868_120 Hb_000868_120 Hb_002110_160--Hb_000868_120 Hb_006452_180--Hb_010287_020 Hb_000048_080 Hb_000048_080 Hb_006452_180--Hb_000048_080 Hb_008725_050 Hb_008725_050 Hb_006452_180--Hb_008725_050 Hb_001245_050 Hb_001245_050 Hb_006452_180--Hb_001245_050 Hb_001009_120 Hb_001009_120 Hb_006452_180--Hb_001009_120 Hb_000089_210 Hb_000089_210 Hb_006452_180--Hb_000089_210 Hb_001635_110 Hb_001635_110 Hb_178968_060--Hb_001635_110 Hb_178968_060--Hb_000230_460 Hb_001300_280 Hb_001300_280 Hb_178968_060--Hb_001300_280 Hb_003498_100 Hb_003498_100 Hb_178968_060--Hb_003498_100 Hb_000120_890 Hb_000120_890 Hb_178968_060--Hb_000120_890 Hb_001221_440 Hb_001221_440 Hb_178968_060--Hb_001221_440 Hb_002435_100 Hb_002435_100 Hb_000230_460--Hb_002435_100 Hb_000176_020 Hb_000176_020 Hb_000230_460--Hb_000176_020 Hb_000137_010 Hb_000137_010 Hb_000230_460--Hb_000137_010 Hb_007254_020 Hb_007254_020 Hb_000230_460--Hb_007254_020 Hb_000160_140 Hb_000160_140 Hb_000230_460--Hb_000160_140 Hb_001357_310 Hb_001357_310 Hb_010775_030--Hb_001357_310 Hb_002014_010 Hb_002014_010 Hb_010775_030--Hb_002014_010 Hb_006588_060 Hb_006588_060 Hb_010775_030--Hb_006588_060 Hb_000086_420 Hb_000086_420 Hb_010775_030--Hb_000086_420 Hb_171900_090 Hb_171900_090 Hb_010775_030--Hb_171900_090 Hb_003470_040 Hb_003470_040 Hb_003687_120--Hb_003470_040 Hb_003687_120--Hb_008725_050 Hb_003428_090 Hb_003428_090 Hb_003687_120--Hb_003428_090 Hb_000723_030 Hb_000723_030 Hb_003687_120--Hb_000723_030 Hb_000890_160 Hb_000890_160 Hb_003687_120--Hb_000890_160 Hb_003687_120--Hb_178968_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.7162 90.9861 126.373 59.8546 51.6572 18.8645
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.7586 56.2655 31.2456 50.7794 42.1021

CAGE analysis