Hb_001863_200

Information

Type -
Description -
Location Contig1863: 136432-140720
Sequence    

Annotation

kegg
ID pop:POPTR_0005s17270g
description POPTRDRAFT_559072; 2-dehydro-3-deoxyphosphoheptonate aldolase family protein
nr
ID AFY09700.1
description chloroplast 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase [Hevea brasiliensis]
swissprot
ID P21357
description Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Solanum tuberosum GN=SHKA PE=1 SV=2
trembl
ID A0A0A6Z9Z1
description Chloroplast 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase OS=Hevea brasiliensis GN=DAHPs PE=4 SV=1
Gene Ontology
ID GO:0003849
description phospho-2-dehydro-3-deoxyheptonate aldolase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001863_200 0.0 - - chloroplast 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase [Hevea brasiliensis]
2 Hb_001619_030 0.1856485208 - - annexin, putative [Ricinus communis]
3 Hb_001006_310 0.2113390471 - - PREDICTED: uncharacterized protein LOC105634192 [Jatropha curcas]
4 Hb_007545_140 0.2142635586 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105141503 [Populus euphratica]
5 Hb_002762_090 0.2353514226 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
6 Hb_032225_030 0.2355288904 - - PREDICTED: leucine-rich repeat extensin-like protein 2 [Jatropha curcas]
7 Hb_011214_120 0.2383211356 - - PREDICTED: uncharacterized protein LOC105636139 [Jatropha curcas]
8 Hb_000056_220 0.2383959199 - - PREDICTED: HVA22-like protein c [Jatropha curcas]
9 Hb_006588_030 0.2398205839 - - PREDICTED: cytochrome P450 CYP72A219-like [Jatropha curcas]
10 Hb_000364_200 0.2403746926 - - o-methyltransferase, putative [Ricinus communis]
11 Hb_002016_020 0.2425391295 - - RALFL33, putative [Ricinus communis]
12 Hb_003893_140 0.2451785327 - - palmitoyl-acyl carrier protein thioesterase [Ricinus communis]
13 Hb_001369_140 0.2459859908 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000032_560 0.2496961973 - - hypothetical protein JCGZ_15037 [Jatropha curcas]
15 Hb_000915_070 0.2500903527 - - ATP binding protein, putative [Ricinus communis]
16 Hb_002597_010 0.2511332724 - - PREDICTED: putative disease resistance protein RGA1 [Malus domestica]
17 Hb_173741_010 0.251952458 - - PREDICTED: caffeoyl-CoA O-methyltransferase isoform X3 [Musa acuminata subsp. malaccensis]
18 Hb_025254_020 0.2555156869 - - PREDICTED: formate dehydrogenase, mitochondrial [Vitis vinifera]
19 Hb_000653_010 0.2571051107 - - hypothetical protein CICLE_v10033238mg [Citrus clementina]
20 Hb_000300_590 0.2577296848 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-11-like [Jatropha curcas]

Gene co-expression network

sample Hb_001863_200 Hb_001863_200 Hb_001619_030 Hb_001619_030 Hb_001863_200--Hb_001619_030 Hb_001006_310 Hb_001006_310 Hb_001863_200--Hb_001006_310 Hb_007545_140 Hb_007545_140 Hb_001863_200--Hb_007545_140 Hb_002762_090 Hb_002762_090 Hb_001863_200--Hb_002762_090 Hb_032225_030 Hb_032225_030 Hb_001863_200--Hb_032225_030 Hb_011214_120 Hb_011214_120 Hb_001863_200--Hb_011214_120 Hb_002527_060 Hb_002527_060 Hb_001619_030--Hb_002527_060 Hb_005181_060 Hb_005181_060 Hb_001619_030--Hb_005181_060 Hb_017559_010 Hb_017559_010 Hb_001619_030--Hb_017559_010 Hb_004330_080 Hb_004330_080 Hb_001619_030--Hb_004330_080 Hb_078081_010 Hb_078081_010 Hb_001619_030--Hb_078081_010 Hb_000590_070 Hb_000590_070 Hb_001619_030--Hb_000590_070 Hb_000139_500 Hb_000139_500 Hb_001006_310--Hb_000139_500 Hb_008066_060 Hb_008066_060 Hb_001006_310--Hb_008066_060 Hb_000723_240 Hb_000723_240 Hb_001006_310--Hb_000723_240 Hb_001922_010 Hb_001922_010 Hb_001006_310--Hb_001922_010 Hb_003160_050 Hb_003160_050 Hb_001006_310--Hb_003160_050 Hb_000347_230 Hb_000347_230 Hb_001006_310--Hb_000347_230 Hb_007545_140--Hb_032225_030 Hb_002597_010 Hb_002597_010 Hb_007545_140--Hb_002597_010 Hb_005152_010 Hb_005152_010 Hb_007545_140--Hb_005152_010 Hb_000589_210 Hb_000589_210 Hb_007545_140--Hb_000589_210 Hb_001369_140 Hb_001369_140 Hb_007545_140--Hb_001369_140 Hb_000380_210 Hb_000380_210 Hb_007545_140--Hb_000380_210 Hb_116478_010 Hb_116478_010 Hb_002762_090--Hb_116478_010 Hb_000300_590 Hb_000300_590 Hb_002762_090--Hb_000300_590 Hb_001758_120 Hb_001758_120 Hb_002762_090--Hb_001758_120 Hb_025254_020 Hb_025254_020 Hb_002762_090--Hb_025254_020 Hb_002475_070 Hb_002475_070 Hb_002762_090--Hb_002475_070 Hb_002016_020 Hb_002016_020 Hb_002762_090--Hb_002016_020 Hb_042509_020 Hb_042509_020 Hb_032225_030--Hb_042509_020 Hb_032225_030--Hb_001369_140 Hb_001170_010 Hb_001170_010 Hb_032225_030--Hb_001170_010 Hb_000110_380 Hb_000110_380 Hb_032225_030--Hb_000110_380 Hb_030982_060 Hb_030982_060 Hb_032225_030--Hb_030982_060 Hb_001959_030 Hb_001959_030 Hb_011214_120--Hb_001959_030 Hb_011214_120--Hb_000589_210 Hb_098030_010 Hb_098030_010 Hb_011214_120--Hb_098030_010 Hb_000364_200 Hb_000364_200 Hb_011214_120--Hb_000364_200 Hb_011214_120--Hb_002016_020 Hb_014834_020 Hb_014834_020 Hb_011214_120--Hb_014834_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.99364 0.75642 0.820435 4.96273 0.644554 0.1402
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.428323 0.0168511 0.127979 9.73682 0.998505

CAGE analysis