Hb_001863_260

Information

Type -
Description -
Location Contig1863: 220728-223290
Sequence    

Annotation

kegg
ID rcu:RCOM_1036630
description ubiquitin-protein ligase, putative
nr
ID XP_002513950.1
description ubiquitin-protein ligase, putative [Ricinus communis]
swissprot
ID Q9ZPE4
description F-box protein FBW2 OS=Arabidopsis thaliana GN=FBW2 PE=1 SV=1
trembl
ID B9RJN1
description Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_1036630 PE=4 SV=1
Gene Ontology
ID GO:0016874
description f-box protein fbw2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18344: 220349-223211 , PASA_asmbl_18346: 220349-223211
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001863_260 0.0 - - ubiquitin-protein ligase, putative [Ricinus communis]
2 Hb_134364_010 0.0746338459 - - PREDICTED: transcriptional adapter ADA2b isoform X1 [Jatropha curcas]
3 Hb_006824_060 0.0862782867 - - PREDICTED: uncharacterized protein LOC105650737 [Jatropha curcas]
4 Hb_030827_030 0.0898929188 - - PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Jatropha curcas]
5 Hb_007262_020 0.0904175212 - - PREDICTED: protein AUXIN SIGNALING F-BOX 2-like [Jatropha curcas]
6 Hb_001085_250 0.0912403708 transcription factor TF Family: G2-like PREDICTED: myb family transcription factor APL isoform X2 [Jatropha curcas]
7 Hb_008253_010 0.0938096129 - - PREDICTED: uncharacterized protein LOC105633240 [Jatropha curcas]
8 Hb_000189_330 0.09685997 - - PREDICTED: ER membrane protein complex subunit 2 [Jatropha curcas]
9 Hb_030131_040 0.0982830665 - - ribosome biogenesis protein tsr1, putative [Ricinus communis]
10 Hb_001983_030 0.0983813791 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 12 isoform X2 [Jatropha curcas]
11 Hb_001085_320 0.1001022515 transcription factor TF Family: LUG WD-repeat protein, putative [Ricinus communis]
12 Hb_009265_080 0.1007077253 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
13 Hb_003006_060 0.1007300357 - - PREDICTED: pre-mRNA-splicing factor syf2 [Jatropha curcas]
14 Hb_000540_150 0.1012796027 - - PREDICTED: uncharacterized protein YKR070W [Jatropha curcas]
15 Hb_002942_080 0.1015267697 - - PREDICTED: signal recognition particle subunit SRP68 [Jatropha curcas]
16 Hb_007668_040 0.1039167424 - - PREDICTED: uncharacterized protein LOC103409082 [Malus domestica]
17 Hb_000368_020 0.1045798078 - - uroporphyrin-III methyltransferase, putative [Ricinus communis]
18 Hb_015763_030 0.1050064975 - - conserved hypothetical protein [Ricinus communis]
19 Hb_010423_020 0.1055157131 - - PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Jatropha curcas]
20 Hb_000104_080 0.106634659 - - PREDICTED: WD repeat domain-containing protein 83 [Jatropha curcas]

Gene co-expression network

sample Hb_001863_260 Hb_001863_260 Hb_134364_010 Hb_134364_010 Hb_001863_260--Hb_134364_010 Hb_006824_060 Hb_006824_060 Hb_001863_260--Hb_006824_060 Hb_030827_030 Hb_030827_030 Hb_001863_260--Hb_030827_030 Hb_007262_020 Hb_007262_020 Hb_001863_260--Hb_007262_020 Hb_001085_250 Hb_001085_250 Hb_001863_260--Hb_001085_250 Hb_008253_010 Hb_008253_010 Hb_001863_260--Hb_008253_010 Hb_134364_010--Hb_008253_010 Hb_000364_080 Hb_000364_080 Hb_134364_010--Hb_000364_080 Hb_009265_080 Hb_009265_080 Hb_134364_010--Hb_009265_080 Hb_010423_020 Hb_010423_020 Hb_134364_010--Hb_010423_020 Hb_002942_160 Hb_002942_160 Hb_134364_010--Hb_002942_160 Hb_000368_020 Hb_000368_020 Hb_006824_060--Hb_000368_020 Hb_000189_330 Hb_000189_330 Hb_006824_060--Hb_000189_330 Hb_007904_120 Hb_007904_120 Hb_006824_060--Hb_007904_120 Hb_001377_320 Hb_001377_320 Hb_006824_060--Hb_001377_320 Hb_006824_060--Hb_008253_010 Hb_003126_100 Hb_003126_100 Hb_030827_030--Hb_003126_100 Hb_001040_040 Hb_001040_040 Hb_030827_030--Hb_001040_040 Hb_000923_040 Hb_000923_040 Hb_030827_030--Hb_000923_040 Hb_000345_530 Hb_000345_530 Hb_030827_030--Hb_000345_530 Hb_000104_080 Hb_000104_080 Hb_030827_030--Hb_000104_080 Hb_002587_020 Hb_002587_020 Hb_030827_030--Hb_002587_020 Hb_012098_110 Hb_012098_110 Hb_007262_020--Hb_012098_110 Hb_007262_020--Hb_007904_120 Hb_000498_010 Hb_000498_010 Hb_007262_020--Hb_000498_010 Hb_000679_130 Hb_000679_130 Hb_007262_020--Hb_000679_130 Hb_000025_110 Hb_000025_110 Hb_007262_020--Hb_000025_110 Hb_001444_010 Hb_001444_010 Hb_007262_020--Hb_001444_010 Hb_001085_250--Hb_007904_120 Hb_001085_250--Hb_007262_020 Hb_007451_050 Hb_007451_050 Hb_001085_250--Hb_007451_050 Hb_001085_250--Hb_001377_320 Hb_001085_250--Hb_006824_060 Hb_008253_010--Hb_009265_080 Hb_002007_350 Hb_002007_350 Hb_008253_010--Hb_002007_350 Hb_004678_060 Hb_004678_060 Hb_008253_010--Hb_004678_060 Hb_007336_020 Hb_007336_020 Hb_008253_010--Hb_007336_020 Hb_007590_080 Hb_007590_080 Hb_008253_010--Hb_007590_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
107.103 36.8979 64.538 41.7248 97.659 130.75
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
74.7512 30.911 30.5703 25.3251 35.9483

CAGE analysis