Hb_001863_270

Information

Type -
Description -
Location Contig1863: 227617-247036
Sequence    

Annotation

kegg
ID pop:POPTR_0005s17260g
description POPTRDRAFT_651263, POPTRDRAFT_760756; hypothetical protein
nr
ID KDP41406.1
description hypothetical protein JCGZ_15813 [Jatropha curcas]
swissprot
ID Q9ZPE7
description Protein EXORDIUM OS=Arabidopsis thaliana GN=EXO PE=2 SV=1
trembl
ID A0A0E0K5F1
description Uncharacterized protein OS=Oryza punctata PE=4 SV=1
Gene Ontology
ID GO:0005737
description phosphotyrosyl phosphatase activator family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18347: 226509-228882 , PASA_asmbl_18349: 233406-234582 , PASA_asmbl_18352: 239969-240281
cDNA
(Sanger)
(ID:Location)		 007_C21.ab1: 229649-230437 , 009_O10.ab1: 229729-230437 , 022_G18.ab1: 236839-237588 , 041_I24.ab1: 228143-228840 , 051_P23.ab1: 233853-234582

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001863_270 0.0 - - hypothetical protein JCGZ_15813 [Jatropha curcas]
2 Hb_000805_040 0.0808368785 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
3 Hb_007120_010 0.1172416389 - - PREDICTED: uncharacterized protein LOC105634737 [Jatropha curcas]
4 Hb_001989_060 0.1211564771 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105634562 isoform X2 [Jatropha curcas]
5 Hb_000373_250 0.1220495286 - - PREDICTED: uncharacterized protein LOC105640939 [Jatropha curcas]
6 Hb_011360_090 0.1228529698 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
7 Hb_002053_030 0.1288743991 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
8 Hb_000532_030 0.1317917804 - - PREDICTED: oxalate--CoA ligase-like [Jatropha curcas]
9 Hb_000345_500 0.1374042232 - - PREDICTED: peroxisomal adenine nucleotide carrier 1 [Jatropha curcas]
10 Hb_000069_330 0.1442373398 - - protein with unknown function [Ricinus communis]
11 Hb_000283_100 0.1460068957 - - PREDICTED: E3 ubiquitin protein ligase DRIP2-like isoform X2 [Jatropha curcas]
12 Hb_011930_120 0.1475927477 - - PREDICTED: uncharacterized protein LOC105649794 isoform X1 [Jatropha curcas]
13 Hb_002445_130 0.1481812227 - - Disease resistance protein RGA2, putative [Ricinus communis]
14 Hb_012787_040 0.1484175631 - - PREDICTED: uncharacterized protein LOC105649794 isoform X2 [Jatropha curcas]
15 Hb_000009_200 0.1495132534 - - PREDICTED: UPF0496 protein At2g18630 [Jatropha curcas]
16 Hb_006538_030 0.1496519427 - - PREDICTED: uncharacterized protein LOC105642039 [Jatropha curcas]
17 Hb_000336_190 0.1498004603 - - PREDICTED: UPF0481 protein At3g47200-like [Gossypium raimondii]
18 Hb_004586_130 0.1515529809 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000776_050 0.1516436969 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
20 Hb_004712_160 0.1520764793 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]

Gene co-expression network

sample Hb_001863_270 Hb_001863_270 Hb_000805_040 Hb_000805_040 Hb_001863_270--Hb_000805_040 Hb_007120_010 Hb_007120_010 Hb_001863_270--Hb_007120_010 Hb_001989_060 Hb_001989_060 Hb_001863_270--Hb_001989_060 Hb_000373_250 Hb_000373_250 Hb_001863_270--Hb_000373_250 Hb_011360_090 Hb_011360_090 Hb_001863_270--Hb_011360_090 Hb_002053_030 Hb_002053_030 Hb_001863_270--Hb_002053_030 Hb_000805_040--Hb_011360_090 Hb_000009_200 Hb_000009_200 Hb_000805_040--Hb_000009_200 Hb_000805_040--Hb_000373_250 Hb_000805_040--Hb_007120_010 Hb_011930_120 Hb_011930_120 Hb_000805_040--Hb_011930_120 Hb_007120_010--Hb_000373_250 Hb_007120_010--Hb_001989_060 Hb_000045_140 Hb_000045_140 Hb_007120_010--Hb_000045_140 Hb_002498_250 Hb_002498_250 Hb_007120_010--Hb_002498_250 Hb_000283_100 Hb_000283_100 Hb_001989_060--Hb_000283_100 Hb_010126_030 Hb_010126_030 Hb_001989_060--Hb_010126_030 Hb_001989_060--Hb_011930_120 Hb_004586_130 Hb_004586_130 Hb_001989_060--Hb_004586_130 Hb_000680_180 Hb_000680_180 Hb_001989_060--Hb_000680_180 Hb_005282_010 Hb_005282_010 Hb_000373_250--Hb_005282_010 Hb_000373_250--Hb_002498_250 Hb_000988_020 Hb_000988_020 Hb_000373_250--Hb_000988_020 Hb_002849_110 Hb_002849_110 Hb_000373_250--Hb_002849_110 Hb_001405_060 Hb_001405_060 Hb_000373_250--Hb_001405_060 Hb_012787_040 Hb_012787_040 Hb_011360_090--Hb_012787_040 Hb_001662_170 Hb_001662_170 Hb_011360_090--Hb_001662_170 Hb_009040_010 Hb_009040_010 Hb_011360_090--Hb_009040_010 Hb_000803_060 Hb_000803_060 Hb_011360_090--Hb_000803_060 Hb_006414_020 Hb_006414_020 Hb_011360_090--Hb_006414_020 Hb_000776_050 Hb_000776_050 Hb_002053_030--Hb_000776_050 Hb_000345_500 Hb_000345_500 Hb_002053_030--Hb_000345_500 Hb_006043_020 Hb_006043_020 Hb_002053_030--Hb_006043_020 Hb_032920_040 Hb_032920_040 Hb_002053_030--Hb_032920_040 Hb_002053_030--Hb_000373_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.1744 411.429 165.819 157.785 21.1289 23.3198
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.7192 21.5916 23.5763 13.0456 35.2315

CAGE analysis