Hb_001863_340

Information

Type -
Description -
Location Contig1863: 307996-315149
Sequence    

Annotation

kegg
ID pop:POPTR_0002s09820g
description POPTRDRAFT_643775; hypothetical protein
nr
ID XP_012067887.1
description PREDICTED: probable pectin methyltransferase QUA2 [Jatropha curcas]
swissprot
ID Q9C9Q8
description Probable pectin methyltransferase QUA2 OS=Arabidopsis thaliana GN=QUA2 PE=1 SV=2
trembl
ID A0A067L2D3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15800 PE=4 SV=1
Gene Ontology
ID GO:0005768
description probable pectin methyltransferase qua2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18358: 308117-315124
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001863_340 0.0 - - PREDICTED: probable pectin methyltransferase QUA2 [Jatropha curcas]
2 Hb_000035_490 0.108981503 transcription factor TF Family: DBB PREDICTED: zinc finger protein CONSTANS-LIKE 4 [Jatropha curcas]
3 Hb_001021_100 0.1151730493 - - PREDICTED: wee1-like protein kinase [Jatropha curcas]
4 Hb_002030_110 0.1233586991 - - PREDICTED: RING-H2 finger protein ATL32-like [Jatropha curcas]
5 Hb_000748_110 0.1269349074 - - Glycosyltransferase QUASIMODO1, putative [Ricinus communis]
6 Hb_021409_110 0.1277918732 - - WD-repeat protein, putative [Ricinus communis]
7 Hb_001250_040 0.127854831 - - hypothetical protein CISIN_1g018444mg [Citrus sinensis]
8 Hb_011381_070 0.1290305719 transcription factor TF Family: DBB PREDICTED: zinc finger protein CONSTANS-LIKE 4 [Jatropha curcas]
9 Hb_025905_010 0.1295145494 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
10 Hb_002997_110 0.1306337305 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 22 isoform X1 [Jatropha curcas]
11 Hb_001894_160 0.131831915 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007224_010 0.1341387185 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
13 Hb_002609_290 0.1369939523 - - PREDICTED: non-specific phospholipase C1 [Jatropha curcas]
14 Hb_003090_150 0.1376934524 - - PREDICTED: phosphatidylinositol:ceramide inositolphosphotransferase 1 [Jatropha curcas]
15 Hb_000928_250 0.1410355924 - - calcium ion binding protein, putative [Ricinus communis]
16 Hb_011671_110 0.1418984248 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
17 Hb_001102_090 0.143302875 - - PREDICTED: mitogen-activated protein kinase 19 [Jatropha curcas]
18 Hb_005214_070 0.143779211 - - PREDICTED: fatty acid amide hydrolase [Jatropha curcas]
19 Hb_000077_210 0.1439707467 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Jatropha curcas]
20 Hb_001571_030 0.1458269627 - - PREDICTED: uncharacterized protein LOC105640040 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001863_340 Hb_001863_340 Hb_000035_490 Hb_000035_490 Hb_001863_340--Hb_000035_490 Hb_001021_100 Hb_001021_100 Hb_001863_340--Hb_001021_100 Hb_002030_110 Hb_002030_110 Hb_001863_340--Hb_002030_110 Hb_000748_110 Hb_000748_110 Hb_001863_340--Hb_000748_110 Hb_021409_110 Hb_021409_110 Hb_001863_340--Hb_021409_110 Hb_001250_040 Hb_001250_040 Hb_001863_340--Hb_001250_040 Hb_011381_070 Hb_011381_070 Hb_000035_490--Hb_011381_070 Hb_000086_640 Hb_000086_640 Hb_000035_490--Hb_000086_640 Hb_000035_490--Hb_001021_100 Hb_132840_020 Hb_132840_020 Hb_000035_490--Hb_132840_020 Hb_011671_110 Hb_011671_110 Hb_000035_490--Hb_011671_110 Hb_001021_100--Hb_011381_070 Hb_001021_100--Hb_011671_110 Hb_005214_070 Hb_005214_070 Hb_001021_100--Hb_005214_070 Hb_015026_020 Hb_015026_020 Hb_001021_100--Hb_015026_020 Hb_003090_150 Hb_003090_150 Hb_002030_110--Hb_003090_150 Hb_001894_160 Hb_001894_160 Hb_002030_110--Hb_001894_160 Hb_000622_210 Hb_000622_210 Hb_002030_110--Hb_000622_210 Hb_033930_010 Hb_033930_010 Hb_002030_110--Hb_033930_010 Hb_000680_180 Hb_000680_180 Hb_002030_110--Hb_000680_180 Hb_000748_110--Hb_005214_070 Hb_000834_050 Hb_000834_050 Hb_000748_110--Hb_000834_050 Hb_001408_020 Hb_001408_020 Hb_000748_110--Hb_001408_020 Hb_007290_070 Hb_007290_070 Hb_000748_110--Hb_007290_070 Hb_000077_210 Hb_000077_210 Hb_000748_110--Hb_000077_210 Hb_007224_010 Hb_007224_010 Hb_021409_110--Hb_007224_010 Hb_089305_010 Hb_089305_010 Hb_021409_110--Hb_089305_010 Hb_001621_050 Hb_001621_050 Hb_021409_110--Hb_001621_050 Hb_000110_260 Hb_000110_260 Hb_021409_110--Hb_000110_260 Hb_005725_280 Hb_005725_280 Hb_021409_110--Hb_005725_280 Hb_001689_050 Hb_001689_050 Hb_001250_040--Hb_001689_050 Hb_003683_030 Hb_003683_030 Hb_001250_040--Hb_003683_030 Hb_000136_020 Hb_000136_020 Hb_001250_040--Hb_000136_020 Hb_001571_030 Hb_001571_030 Hb_001250_040--Hb_001571_030 Hb_007594_080 Hb_007594_080 Hb_001250_040--Hb_007594_080 Hb_001624_040 Hb_001624_040 Hb_001250_040--Hb_001624_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.11686 40.8776 63.7419 31.3995 9.69146 6.45073
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.61602 1.5476 3.60012 6.30174 32.3768

CAGE analysis