Hb_001863_400

Information

Type -
Description -
Location Contig1863: 340361-342269
Sequence    

Annotation

kegg
ID cic:CICLE_v10016165mg
description hypothetical protein
nr
ID KCW69991.1
description hypothetical protein EUGRSUZ_F03302 [Eucalyptus grandis]
swissprot
ID Q6K1U4
description Probable protein phosphatase 2C 16 OS=Oryza sativa subsp. japonica GN=Os02g0598400 PE=2 SV=1
trembl
ID A0A059BVN4
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F03302 PE=4 SV=1
Gene Ontology
ID GO:0004722
description probable protein phosphatase 2c 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18369: 340401-341734
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001863_400 0.0 - - hypothetical protein EUGRSUZ_F03302 [Eucalyptus grandis]
2 Hb_003994_040 0.0758414508 - - -
3 Hb_001248_080 0.0788795148 - - PREDICTED: 40S ribosomal protein S29 [Nelumbo nucifera]
4 Hb_001141_030 0.083580934 - - hypothetical protein PRUPE_ppa024854mg [Prunus persica]
5 Hb_003203_040 0.0838304995 - - PREDICTED: transcription initiation factor TFIID subunit 7 [Vitis vinifera]
6 Hb_003455_040 0.0857058202 - - hypothetical protein JCGZ_17270 [Jatropha curcas]
7 Hb_076626_010 0.0867036153 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002217_450 0.0878072106 - - PREDICTED: probable prefoldin subunit 3 [Jatropha curcas]
9 Hb_000905_180 0.0902726377 - - 60S ribosomal protein L31A [Hevea brasiliensis]
10 Hb_003893_050 0.0910183648 - - PREDICTED: SUMO-activating enzyme subunit 1B-1 isoform X1 [Jatropha curcas]
11 Hb_011311_010 0.0912339953 - - 60S ribosomal protein L27C [Hevea brasiliensis]
12 Hb_005590_020 0.0922075849 - - hypothetical protein CICLE_v10010008mg [Citrus clementina]
13 Hb_003398_120 0.0942394441 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
14 Hb_000331_700 0.0943162374 - - PREDICTED: uncharacterized protein LOC105640277 [Jatropha curcas]
15 Hb_000136_170 0.0959694438 - - PREDICTED: uncharacterized protein LOC105645501 [Jatropha curcas]
16 Hb_005731_170 0.0962124711 - - hypothetical protein PRUPE_ppa011750mg [Prunus persica]
17 Hb_011628_040 0.0966120906 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
18 Hb_000395_240 0.0980328835 - - hypothetical protein CICLE_v10010039mg [Citrus clementina]
19 Hb_000028_400 0.0987735263 - - Protein SSU72, putative [Ricinus communis]
20 Hb_005841_050 0.0989952523 - - PREDICTED: F-box protein SKIP1-like [Jatropha curcas]

Gene co-expression network

sample Hb_001863_400 Hb_001863_400 Hb_003994_040 Hb_003994_040 Hb_001863_400--Hb_003994_040 Hb_001248_080 Hb_001248_080 Hb_001863_400--Hb_001248_080 Hb_001141_030 Hb_001141_030 Hb_001863_400--Hb_001141_030 Hb_003203_040 Hb_003203_040 Hb_001863_400--Hb_003203_040 Hb_003455_040 Hb_003455_040 Hb_001863_400--Hb_003455_040 Hb_076626_010 Hb_076626_010 Hb_001863_400--Hb_076626_010 Hb_003994_040--Hb_003455_040 Hb_017948_010 Hb_017948_010 Hb_003994_040--Hb_017948_010 Hb_003053_030 Hb_003053_030 Hb_003994_040--Hb_003053_030 Hb_005474_060 Hb_005474_060 Hb_003994_040--Hb_005474_060 Hb_000173_220 Hb_000173_220 Hb_003994_040--Hb_000173_220 Hb_011644_030 Hb_011644_030 Hb_003994_040--Hb_011644_030 Hb_155764_020 Hb_155764_020 Hb_001248_080--Hb_155764_020 Hb_003398_120 Hb_003398_120 Hb_001248_080--Hb_003398_120 Hb_148930_010 Hb_148930_010 Hb_001248_080--Hb_148930_010 Hb_004724_160 Hb_004724_160 Hb_001248_080--Hb_004724_160 Hb_001998_050 Hb_001998_050 Hb_001248_080--Hb_001998_050 Hb_000563_240 Hb_000563_240 Hb_001248_080--Hb_000563_240 Hb_001141_030--Hb_003203_040 Hb_001109_020 Hb_001109_020 Hb_001141_030--Hb_001109_020 Hb_001143_080 Hb_001143_080 Hb_001141_030--Hb_001143_080 Hb_001141_030--Hb_003455_040 Hb_012753_160 Hb_012753_160 Hb_001141_030--Hb_012753_160 Hb_001141_030--Hb_003994_040 Hb_011628_040 Hb_011628_040 Hb_003203_040--Hb_011628_040 Hb_003893_050 Hb_003893_050 Hb_003203_040--Hb_003893_050 Hb_010672_070 Hb_010672_070 Hb_003203_040--Hb_010672_070 Hb_005511_160 Hb_005511_160 Hb_003203_040--Hb_005511_160 Hb_005063_050 Hb_005063_050 Hb_003203_040--Hb_005063_050 Hb_003376_030 Hb_003376_030 Hb_003455_040--Hb_003376_030 Hb_003455_040--Hb_000173_220 Hb_003455_040--Hb_012753_160 Hb_002027_210 Hb_002027_210 Hb_003455_040--Hb_002027_210 Hb_002097_060 Hb_002097_060 Hb_003455_040--Hb_002097_060 Hb_076626_010--Hb_010672_070 Hb_005590_020 Hb_005590_020 Hb_076626_010--Hb_005590_020 Hb_002999_050 Hb_002999_050 Hb_076626_010--Hb_002999_050 Hb_000933_160 Hb_000933_160 Hb_076626_010--Hb_000933_160 Hb_001158_230 Hb_001158_230 Hb_076626_010--Hb_001158_230 Hb_076626_010--Hb_003893_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.25478 4.40026 3.82321 4.53817 5.89163 14.1965
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.7879 38.5043 18.0893 5.34951 4.35866

CAGE analysis