Hb_001863_410

Information

Type -
Description -
Location Contig1863: 345600-350255
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa015000mg
description hypothetical protein
nr
ID XP_007200265.1
description hypothetical protein PRUPE_ppa015000mg [Prunus persica]
swissprot
ID P0CT40
description Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1
trembl
ID M5VK25
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001863_410 0.0 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
2 Hb_000856_120 0.1805034788 transcription factor TF Family: LOB PREDICTED: myb-like protein M [Pyrus x bretschneideri]
3 Hb_002154_080 0.1995537285 - - hypothetical protein MIMGU_mgv1a018017mg, partial [Erythranthe guttata]
4 Hb_001711_040 0.2145973948 - - conserved hypothetical protein [Ricinus communis]
5 Hb_118046_010 0.2150051215 - - PREDICTED: uncharacterized protein LOC102596706 [Solanum tuberosum]
6 Hb_003442_120 0.2192076557 - - hypothetical protein VITISV_019818 [Vitis vinifera]
7 Hb_000028_270 0.2214699325 - - -
8 Hb_130579_050 0.2266217036 - - hypothetical protein JCGZ_25577 [Jatropha curcas]
9 Hb_004063_010 0.2284494649 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_000236_430 0.2312839509 - - PREDICTED: uncharacterized protein LOC105633302 [Jatropha curcas]
11 Hb_002025_240 0.2330662757 - - -
12 Hb_000527_120 0.2348650365 - - hypothetical protein VITISV_027174 [Vitis vinifera]
13 Hb_000392_410 0.2383756346 - - PREDICTED: uncharacterized protein LOC104882159 [Vitis vinifera]
14 Hb_003106_250 0.2395187601 - - hypothetical protein POPTR_0008s13520g [Populus trichocarpa]
15 Hb_003727_060 0.2414342605 - - nucleic acid binding protein, putative [Ricinus communis]
16 Hb_058095_030 0.2438792457 - - -
17 Hb_033594_050 0.2466440686 - - PREDICTED: cyclin-D4-1-like [Jatropha curcas]
18 Hb_002110_110 0.2533183815 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
19 Hb_002585_060 0.2542003777 - - PREDICTED: uncharacterized protein LOC104899128, partial [Beta vulgaris subsp. vulgaris]
20 Hb_000812_030 0.2579259972 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]

Gene co-expression network

sample Hb_001863_410 Hb_001863_410 Hb_000856_120 Hb_000856_120 Hb_001863_410--Hb_000856_120 Hb_002154_080 Hb_002154_080 Hb_001863_410--Hb_002154_080 Hb_001711_040 Hb_001711_040 Hb_001863_410--Hb_001711_040 Hb_118046_010 Hb_118046_010 Hb_001863_410--Hb_118046_010 Hb_003442_120 Hb_003442_120 Hb_001863_410--Hb_003442_120 Hb_000028_270 Hb_000028_270 Hb_001863_410--Hb_000028_270 Hb_000856_120--Hb_001711_040 Hb_005999_010 Hb_005999_010 Hb_000856_120--Hb_005999_010 Hb_000856_120--Hb_003442_120 Hb_009780_010 Hb_009780_010 Hb_000856_120--Hb_009780_010 Hb_000856_120--Hb_118046_010 Hb_000959_050 Hb_000959_050 Hb_002154_080--Hb_000959_050 Hb_142522_040 Hb_142522_040 Hb_002154_080--Hb_142522_040 Hb_000812_030 Hb_000812_030 Hb_002154_080--Hb_000812_030 Hb_002154_080--Hb_000028_270 Hb_000527_120 Hb_000527_120 Hb_002154_080--Hb_000527_120 Hb_005765_020 Hb_005765_020 Hb_001711_040--Hb_005765_020 Hb_001711_040--Hb_000028_270 Hb_000832_010 Hb_000832_010 Hb_001711_040--Hb_000832_010 Hb_058095_030 Hb_058095_030 Hb_001711_040--Hb_058095_030 Hb_118046_010--Hb_003442_120 Hb_004063_010 Hb_004063_010 Hb_118046_010--Hb_004063_010 Hb_003727_060 Hb_003727_060 Hb_118046_010--Hb_003727_060 Hb_130579_050 Hb_130579_050 Hb_118046_010--Hb_130579_050 Hb_002025_240 Hb_002025_240 Hb_118046_010--Hb_002025_240 Hb_118046_010--Hb_000028_270 Hb_003442_120--Hb_002025_240 Hb_003442_120--Hb_004063_010 Hb_003442_120--Hb_130579_050 Hb_003442_120--Hb_003727_060 Hb_003442_120--Hb_000028_270 Hb_000028_270--Hb_058095_030 Hb_000028_270--Hb_004063_010 Hb_000028_270--Hb_005765_020 Hb_002585_060 Hb_002585_060 Hb_000028_270--Hb_002585_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0190949 0.137122 0.0334928 0 0.0042181 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0102107 0 0 0.0477291 0.137861

CAGE analysis