Hb_001863_420

Information

Type -
Description -
Location Contig1863: 354837-357227
Sequence    

Annotation

kegg
ID vvi:100854692
description probable protein phosphatase 2C 10
nr
ID XP_010645226.1
description PREDICTED: probable protein phosphatase 2C 10, partial [Vitis vinifera]
swissprot
ID Q7XP01
description Probable protein phosphatase 2C 37 OS=Oryza sativa subsp. japonica GN=Os04g0167900 PE=3 SV=2
trembl
ID M1AY01
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400012581 PE=4 SV=1
Gene Ontology
ID GO:0003824
description probable protein phosphatase 2c 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001863_420 0.0 - - PREDICTED: probable protein phosphatase 2C 10, partial [Vitis vinifera]
2 Hb_002918_140 0.096072371 - - PREDICTED: protein yippee-like At5g53940 [Jatropha curcas]
3 Hb_001386_050 0.1236589672 - - PREDICTED: protein transport protein Sec61 subunit gamma-like [Jatropha curcas]
4 Hb_001159_200 0.1255649663 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
5 Hb_002105_030 0.13426186 - - -
6 Hb_001369_400 0.1372724401 - - PREDICTED: uncharacterized protein LOC105648609 [Jatropha curcas]
7 Hb_003086_060 0.1403617596 - - PREDICTED: uncharacterized protein LOC105629937 [Jatropha curcas]
8 Hb_000431_160 0.1408618491 - - PREDICTED: protein transport protein Sec61 subunit gamma-like [Jatropha curcas]
9 Hb_000103_550 0.1420744553 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 2 isoform X1 [Jatropha curcas]
10 Hb_034585_050 0.142523558 - - -
11 Hb_000878_020 0.1463444761 - - PREDICTED: uncharacterized protein LOC105629937 [Jatropha curcas]
12 Hb_003181_050 0.148095626 - - PREDICTED: DNA replication complex GINS protein PSF2 [Jatropha curcas]
13 Hb_012053_010 0.15064818 - - srpk, putative [Ricinus communis]
14 Hb_004545_130 0.1521387897 - - uncharacterized protein LOC100305465 [Glycine max]
15 Hb_027892_040 0.1528042688 - - PREDICTED: proteasome subunit alpha type-6 [Jatropha curcas]
16 Hb_000617_110 0.153666864 - - translationally controlled tumor protein [Hevea brasiliensis]
17 Hb_006738_010 0.1582386498 - - PREDICTED: uncharacterized protein LOC105634993 [Jatropha curcas]
18 Hb_146225_010 0.1584444143 - - mitochondrial inner membrane protease subunit, putative [Ricinus communis]
19 Hb_002759_240 0.1597082062 - - hypothetical protein EUGRSUZ_E01319 [Eucalyptus grandis]
20 Hb_000094_110 0.1604355069 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001863_420 Hb_001863_420 Hb_002918_140 Hb_002918_140 Hb_001863_420--Hb_002918_140 Hb_001386_050 Hb_001386_050 Hb_001863_420--Hb_001386_050 Hb_001159_200 Hb_001159_200 Hb_001863_420--Hb_001159_200 Hb_002105_030 Hb_002105_030 Hb_001863_420--Hb_002105_030 Hb_001369_400 Hb_001369_400 Hb_001863_420--Hb_001369_400 Hb_003086_060 Hb_003086_060 Hb_001863_420--Hb_003086_060 Hb_034585_050 Hb_034585_050 Hb_002918_140--Hb_034585_050 Hb_002918_140--Hb_001386_050 Hb_001017_070 Hb_001017_070 Hb_002918_140--Hb_001017_070 Hb_017862_010 Hb_017862_010 Hb_002918_140--Hb_017862_010 Hb_000676_240 Hb_000676_240 Hb_002918_140--Hb_000676_240 Hb_008948_050 Hb_008948_050 Hb_001386_050--Hb_008948_050 Hb_000878_020 Hb_000878_020 Hb_001386_050--Hb_000878_020 Hb_002344_070 Hb_002344_070 Hb_001386_050--Hb_002344_070 Hb_000853_240 Hb_000853_240 Hb_001386_050--Hb_000853_240 Hb_006588_080 Hb_006588_080 Hb_001386_050--Hb_006588_080 Hb_000805_130 Hb_000805_130 Hb_001386_050--Hb_000805_130 Hb_001159_200--Hb_001369_400 Hb_000281_230 Hb_000281_230 Hb_001159_200--Hb_000281_230 Hb_002876_370 Hb_002876_370 Hb_001159_200--Hb_002876_370 Hb_000788_080 Hb_000788_080 Hb_001159_200--Hb_000788_080 Hb_000318_490 Hb_000318_490 Hb_001159_200--Hb_000318_490 Hb_002105_030--Hb_001386_050 Hb_012053_010 Hb_012053_010 Hb_002105_030--Hb_012053_010 Hb_001449_090 Hb_001449_090 Hb_002105_030--Hb_001449_090 Hb_002105_030--Hb_002344_070 Hb_146225_010 Hb_146225_010 Hb_002105_030--Hb_146225_010 Hb_000282_070 Hb_000282_070 Hb_002105_030--Hb_000282_070 Hb_001369_400--Hb_002876_370 Hb_000819_070 Hb_000819_070 Hb_001369_400--Hb_000819_070 Hb_001369_400--Hb_000318_490 Hb_000976_250 Hb_000976_250 Hb_001369_400--Hb_000976_250 Hb_001369_400--Hb_034585_050 Hb_002518_290 Hb_002518_290 Hb_003086_060--Hb_002518_290 Hb_062135_020 Hb_062135_020 Hb_003086_060--Hb_062135_020 Hb_003185_050 Hb_003185_050 Hb_003086_060--Hb_003185_050 Hb_000236_150 Hb_000236_150 Hb_003086_060--Hb_000236_150 Hb_003086_060--Hb_001159_200 Hb_003086_060--Hb_002918_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.4074 2.39574 2.08316 1.01386 4.36518 4.2864
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.506 65.0853 22.6173 5.54494 6.5244

CAGE analysis