Hb_001863_440

Information

Type -
Description -
Location Contig1863: 365567-366815
Sequence    

Annotation

kegg
ID rcu:RCOM_1035440
description Nodulin-26, putative
nr
ID XP_002513923.1
description Nodulin-26, putative [Ricinus communis]
swissprot
ID Q8LFP7
description Aquaporin NIP1-2 OS=Arabidopsis thaliana GN=NIP1-2 PE=2 SV=2
trembl
ID B9RJK4
description Nodulin-26, putative OS=Ricinus communis GN=RCOM_1035440 PE=3 SV=1
Gene Ontology
ID GO:0016021
description nodulin-26-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001863_440 0.0 - - Nodulin-26, putative [Ricinus communis]
2 Hb_089160_010 0.2209138869 - - PREDICTED: uncharacterized protein LOC105793196 [Gossypium raimondii]
3 Hb_008864_070 0.2579714468 - - PREDICTED: uncharacterized protein LOC105803851 [Gossypium raimondii]
4 Hb_001894_090 0.2651939274 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH90 [Jatropha curcas]
5 Hb_001449_050 0.2661031578 - - conserved hypothetical protein [Ricinus communis]
6 Hb_006502_050 0.2870756348 - - -
7 Hb_161785_010 0.2878943567 - - PREDICTED: uncharacterized protein LOC105785094 [Gossypium raimondii]
8 Hb_001902_150 0.299190976 - - PREDICTED: cytokinin hydroxylase-like [Jatropha curcas]
9 Hb_000676_270 0.2992127455 transcription factor TF Family: SRS PREDICTED: protein SHI RELATED SEQUENCE 1 [Jatropha curcas]
10 Hb_010288_040 0.3005207056 - - PREDICTED: transmembrane protein 205-like [Eucalyptus grandis]
11 Hb_006907_120 0.3006074888 - - PREDICTED: uncharacterized protein LOC103327233 [Prunus mume]
12 Hb_000186_210 0.3086154945 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
13 Hb_004296_020 0.3163313935 - - unnamed protein product [Coffea canephora]
14 Hb_000077_240 0.3182146756 - - hypothetical protein PHAVU_011G114500g, partial [Phaseolus vulgaris]
15 Hb_000343_180 0.3192652802 - - NDWp3 [Podospora anserina]
16 Hb_003398_030 0.3246693593 - - PREDICTED: uncharacterized protein LOC104583892 [Brachypodium distachyon]
17 Hb_087596_010 0.3340879028 - - PREDICTED: disease resistance protein RPS4-like [Jatropha curcas]
18 Hb_001195_680 0.3370328813 - - PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 4 [Jatropha curcas]
19 Hb_007105_010 0.3386948876 - - PREDICTED: uncharacterized protein LOC103455579 [Malus domestica]
20 Hb_015690_020 0.3387212567 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_001863_440 Hb_001863_440 Hb_089160_010 Hb_089160_010 Hb_001863_440--Hb_089160_010 Hb_008864_070 Hb_008864_070 Hb_001863_440--Hb_008864_070 Hb_001894_090 Hb_001894_090 Hb_001863_440--Hb_001894_090 Hb_001449_050 Hb_001449_050 Hb_001863_440--Hb_001449_050 Hb_006502_050 Hb_006502_050 Hb_001863_440--Hb_006502_050 Hb_161785_010 Hb_161785_010 Hb_001863_440--Hb_161785_010 Hb_089160_010--Hb_001449_050 Hb_002007_190 Hb_002007_190 Hb_089160_010--Hb_002007_190 Hb_009974_030 Hb_009974_030 Hb_089160_010--Hb_009974_030 Hb_089160_010--Hb_161785_010 Hb_000130_230 Hb_000130_230 Hb_089160_010--Hb_000130_230 Hb_006096_010 Hb_006096_010 Hb_008864_070--Hb_006096_010 Hb_005701_030 Hb_005701_030 Hb_008864_070--Hb_005701_030 Hb_001902_150 Hb_001902_150 Hb_008864_070--Hb_001902_150 Hb_000186_210 Hb_000186_210 Hb_008864_070--Hb_000186_210 Hb_000167_020 Hb_000167_020 Hb_008864_070--Hb_000167_020 Hb_000343_180 Hb_000343_180 Hb_001894_090--Hb_000343_180 Hb_000802_110 Hb_000802_110 Hb_001894_090--Hb_000802_110 Hb_000260_290 Hb_000260_290 Hb_001894_090--Hb_000260_290 Hb_002686_120 Hb_002686_120 Hb_001894_090--Hb_002686_120 Hb_001433_180 Hb_001433_180 Hb_001894_090--Hb_001433_180 Hb_001449_050--Hb_000343_180 Hb_012052_070 Hb_012052_070 Hb_001449_050--Hb_012052_070 Hb_005147_010 Hb_005147_010 Hb_001449_050--Hb_005147_010 Hb_140049_010 Hb_140049_010 Hb_001449_050--Hb_140049_010 Hb_023344_080 Hb_023344_080 Hb_001449_050--Hb_023344_080 Hb_002234_190 Hb_002234_190 Hb_006502_050--Hb_002234_190 Hb_073395_010 Hb_073395_010 Hb_006502_050--Hb_073395_010 Hb_021888_050 Hb_021888_050 Hb_006502_050--Hb_021888_050 Hb_001902_190 Hb_001902_190 Hb_006502_050--Hb_001902_190 Hb_000345_200 Hb_000345_200 Hb_006502_050--Hb_000345_200 Hb_000841_060 Hb_000841_060 Hb_006502_050--Hb_000841_060 Hb_111039_010 Hb_111039_010 Hb_161785_010--Hb_111039_010 Hb_017134_010 Hb_017134_010 Hb_161785_010--Hb_017134_010 Hb_004291_010 Hb_004291_010 Hb_161785_010--Hb_004291_010 Hb_001300_260 Hb_001300_260 Hb_161785_010--Hb_001300_260 Hb_000676_270 Hb_000676_270 Hb_161785_010--Hb_000676_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.574399 0 0 0 0.0639506
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.249656 0.343558 0.178488 0.11896 0

CAGE analysis