Hb_001863_480

Information

Type -
Description -
Location Contig1863: 398369-404827
Sequence    

Annotation

kegg
ID tcc:TCM_034905
description hypothetical protein
nr
ID XP_012067871.1
description PREDICTED: uncharacterized protein LOC105630612 [Jatropha curcas]
swissprot
ID Q6GQ39
description Transmembrane protein 135 OS=Xenopus laevis GN=tmem135 PE=2 SV=1
trembl
ID A0A067L2C4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15785 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18383: 398155-404687 , PASA_asmbl_18384: 398155-404520 , PASA_asmbl_18385: 398155-398924
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001863_480 0.0 - - PREDICTED: uncharacterized protein LOC105630612 [Jatropha curcas]
2 Hb_001711_030 0.0675018837 - - PREDICTED: uncharacterized protein LOC105642409 [Jatropha curcas]
3 Hb_004738_010 0.0797434384 - - PREDICTED: N-acetyl-D-glucosamine kinase-like [Jatropha curcas]
4 Hb_003408_020 0.0846677924 - - hypothetical protein RCOM_0453040 [Ricinus communis]
5 Hb_001439_170 0.0854812216 - - PREDICTED: pectinesterase 31-like isoform X2 [Jatropha curcas]
6 Hb_171554_080 0.0928657911 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
7 Hb_002539_080 0.0948183614 - - PREDICTED: triose phosphate/phosphate translocator, chloroplastic-like [Jatropha curcas]
8 Hb_002119_120 0.0964038263 - - PREDICTED: anthranilate synthase beta subunit 1, chloroplastic-like [Jatropha curcas]
9 Hb_000922_270 0.09935586 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
10 Hb_007924_020 0.0993668233 - - PREDICTED: chaperonin CPN60-like 2, mitochondrial isoform X2 [Jatropha curcas]
11 Hb_002527_070 0.1010443847 - - axonemal dynein light chain, putative [Ricinus communis]
12 Hb_000419_040 0.1022036909 - - chorismate synthase [Hevea brasiliensis]
13 Hb_002235_400 0.1046775817 - - PREDICTED: uncharacterized protein At5g19025-like isoform X1 [Populus euphratica]
14 Hb_002735_060 0.1051366502 - - PREDICTED: desumoylating isopeptidase 1 [Jatropha curcas]
15 Hb_000496_060 0.1072084794 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH3 [Jatropha curcas]
16 Hb_044662_070 0.1076638856 - - PREDICTED: hsp70-Hsp90 organizing protein 3 [Jatropha curcas]
17 Hb_012522_030 0.1097828677 - - ankyrin repeat-containing protein, putative [Ricinus communis]
18 Hb_001762_060 0.1099675478 - - pantothenate kinase, putative [Ricinus communis]
19 Hb_157022_020 0.1106086977 - - nicotinamide mononucleotide adenylyltransferase, putative [Ricinus communis]
20 Hb_003175_040 0.1134551328 - - PREDICTED: katanin p60 ATPase-containing subunit A1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001863_480 Hb_001863_480 Hb_001711_030 Hb_001711_030 Hb_001863_480--Hb_001711_030 Hb_004738_010 Hb_004738_010 Hb_001863_480--Hb_004738_010 Hb_003408_020 Hb_003408_020 Hb_001863_480--Hb_003408_020 Hb_001439_170 Hb_001439_170 Hb_001863_480--Hb_001439_170 Hb_171554_080 Hb_171554_080 Hb_001863_480--Hb_171554_080 Hb_002539_080 Hb_002539_080 Hb_001863_480--Hb_002539_080 Hb_000051_040 Hb_000051_040 Hb_001711_030--Hb_000051_040 Hb_012522_030 Hb_012522_030 Hb_001711_030--Hb_012522_030 Hb_002527_070 Hb_002527_070 Hb_001711_030--Hb_002527_070 Hb_000922_270 Hb_000922_270 Hb_001711_030--Hb_000922_270 Hb_001711_030--Hb_001439_170 Hb_002119_120 Hb_002119_120 Hb_004738_010--Hb_002119_120 Hb_000907_090 Hb_000907_090 Hb_004738_010--Hb_000907_090 Hb_004738_010--Hb_001439_170 Hb_004738_010--Hb_001711_030 Hb_000032_040 Hb_000032_040 Hb_004738_010--Hb_000032_040 Hb_003175_040 Hb_003175_040 Hb_003408_020--Hb_003175_040 Hb_003408_020--Hb_000922_270 Hb_000220_050 Hb_000220_050 Hb_003408_020--Hb_000220_050 Hb_044662_070 Hb_044662_070 Hb_003408_020--Hb_044662_070 Hb_003408_020--Hb_002527_070 Hb_000012_130 Hb_000012_130 Hb_001439_170--Hb_000012_130 Hb_001439_170--Hb_002119_120 Hb_001439_170--Hb_044662_070 Hb_001439_170--Hb_002539_080 Hb_012573_030 Hb_012573_030 Hb_171554_080--Hb_012573_030 Hb_054865_130 Hb_054865_130 Hb_171554_080--Hb_054865_130 Hb_009265_060 Hb_009265_060 Hb_171554_080--Hb_009265_060 Hb_171554_080--Hb_012522_030 Hb_000419_040 Hb_000419_040 Hb_171554_080--Hb_000419_040 Hb_002282_020 Hb_002282_020 Hb_002539_080--Hb_002282_020 Hb_002539_080--Hb_001711_030 Hb_002539_080--Hb_002527_070 Hb_002735_060 Hb_002735_060 Hb_002539_080--Hb_002735_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.5442 4.24071 5.88743 7.24218 11.9472 18.9181
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
54.9423 25.7342 41.4178 8.70932 5.76185

CAGE analysis