Hb_001863_500

Information

Type -
Description -
Location Contig1863: 416006-421287
Sequence    

Annotation

kegg
ID rcu:RCOM_1035190
description Protein brittle-1, chloroplast precursor, putative
nr
ID XP_002513918.1
description Protein brittle-1, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q9LV81
description Probable mitochondrial adenine nucleotide transporter BTL3 OS=Arabidopsis thaliana GN=At5g64970 PE=2 SV=1
trembl
ID B9RJJ9
description Protein brittle-1, chloroplast, putative OS=Ricinus communis GN=RCOM_1035190 PE=3 SV=1
Gene Ontology
ID GO:0016021
description probable mitochondrial adenine nucleotide transporter btl3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001863_500 0.0 - - Protein brittle-1, chloroplast precursor, putative [Ricinus communis]
2 Hb_000200_030 0.1195815544 - - PREDICTED: sec-independent protein translocase protein TATC, chloroplastic [Jatropha curcas]
3 Hb_002095_010 0.121552428 - - PREDICTED: glutamate receptor 3.7 isoform X1 [Jatropha curcas]
4 Hb_001301_100 0.1241619326 - - transporter, putative [Ricinus communis]
5 Hb_006275_070 0.1246100648 - - PREDICTED: general transcription factor IIF subunit 2 [Jatropha curcas]
6 Hb_007317_140 0.1263197314 - - expressed protein, putative [Ricinus communis]
7 Hb_001117_200 0.1301001384 transcription factor TF Family: SWI/SNF-BAF60b conserved hypothetical protein [Ricinus communis]
8 Hb_001005_050 0.1336989737 - - hypothetical protein Csa_3G599480 [Cucumis sativus]
9 Hb_001435_030 0.1366548869 - - PREDICTED: uncharacterized protein LOC105645073 [Jatropha curcas]
10 Hb_002055_040 0.1370110135 - - PREDICTED: large subunit GTPase 1 homolog [Jatropha curcas]
11 Hb_001341_070 0.1374280394 - - PREDICTED: uncharacterized protein LOC105628138 isoform X1 [Jatropha curcas]
12 Hb_007101_080 0.1387474589 transcription factor TF Family: GNAT GCN5-related N-acetyltransferase family protein [Populus trichocarpa]
13 Hb_024570_010 0.1388951763 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
14 Hb_002374_240 0.139660595 - - nucellin, putative [Ricinus communis]
15 Hb_003994_150 0.1401828436 - - PREDICTED: pyrophosphate-energized membrane proton pump 2 [Jatropha curcas]
16 Hb_000352_190 0.1412742074 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 41 [Jatropha curcas]
17 Hb_010710_070 0.1446094628 - - PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]
18 Hb_011228_010 0.1458451837 - - PREDICTED: vacuolar protein sorting-associated protein 54, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_020665_010 0.1463032777 - - PREDICTED: uncharacterized protein LOC103438977 isoform X2 [Malus domestica]
20 Hb_000739_310 0.1469749168 - - PREDICTED: uncharacterized protein LOC105643091 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001863_500 Hb_001863_500 Hb_000200_030 Hb_000200_030 Hb_001863_500--Hb_000200_030 Hb_002095_010 Hb_002095_010 Hb_001863_500--Hb_002095_010 Hb_001301_100 Hb_001301_100 Hb_001863_500--Hb_001301_100 Hb_006275_070 Hb_006275_070 Hb_001863_500--Hb_006275_070 Hb_007317_140 Hb_007317_140 Hb_001863_500--Hb_007317_140 Hb_001117_200 Hb_001117_200 Hb_001863_500--Hb_001117_200 Hb_002374_240 Hb_002374_240 Hb_000200_030--Hb_002374_240 Hb_000224_160 Hb_000224_160 Hb_000200_030--Hb_000224_160 Hb_000184_170 Hb_000184_170 Hb_000200_030--Hb_000184_170 Hb_004994_380 Hb_004994_380 Hb_000200_030--Hb_004994_380 Hb_000915_260 Hb_000915_260 Hb_000200_030--Hb_000915_260 Hb_022693_140 Hb_022693_140 Hb_000200_030--Hb_022693_140 Hb_010710_070 Hb_010710_070 Hb_002095_010--Hb_010710_070 Hb_028912_050 Hb_028912_050 Hb_002095_010--Hb_028912_050 Hb_000005_190 Hb_000005_190 Hb_002095_010--Hb_000005_190 Hb_006660_010 Hb_006660_010 Hb_002095_010--Hb_006660_010 Hb_000739_310 Hb_000739_310 Hb_002095_010--Hb_000739_310 Hb_004963_030 Hb_004963_030 Hb_002095_010--Hb_004963_030 Hb_001442_040 Hb_001442_040 Hb_001301_100--Hb_001442_040 Hb_003847_130 Hb_003847_130 Hb_001301_100--Hb_003847_130 Hb_002044_150 Hb_002044_150 Hb_001301_100--Hb_002044_150 Hb_004846_220 Hb_004846_220 Hb_001301_100--Hb_004846_220 Hb_001301_100--Hb_007317_140 Hb_002592_060 Hb_002592_060 Hb_001301_100--Hb_002592_060 Hb_029879_070 Hb_029879_070 Hb_006275_070--Hb_029879_070 Hb_000479_250 Hb_000479_250 Hb_006275_070--Hb_000479_250 Hb_000656_010 Hb_000656_010 Hb_006275_070--Hb_000656_010 Hb_001936_130 Hb_001936_130 Hb_006275_070--Hb_001936_130 Hb_008176_010 Hb_008176_010 Hb_006275_070--Hb_008176_010 Hb_004159_020 Hb_004159_020 Hb_006275_070--Hb_004159_020 Hb_007317_140--Hb_028912_050 Hb_007317_140--Hb_010710_070 Hb_000261_060 Hb_000261_060 Hb_007317_140--Hb_000261_060 Hb_007317_140--Hb_001442_040 Hb_003020_030 Hb_003020_030 Hb_007317_140--Hb_003020_030 Hb_000025_270 Hb_000025_270 Hb_001117_200--Hb_000025_270 Hb_001824_090 Hb_001824_090 Hb_001117_200--Hb_001824_090 Hb_007101_080 Hb_007101_080 Hb_001117_200--Hb_007101_080 Hb_005282_020 Hb_005282_020 Hb_001117_200--Hb_005282_020 Hb_002518_120 Hb_002518_120 Hb_001117_200--Hb_002518_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.936854 0.323991 1.40169 0.901936 1.74525 2.31899
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.26061 1.19937 2.73562 2.04235 3.09506

CAGE analysis