Hb_001864_010

Information

Type -
Description -
Location Contig1864: 18437-21741
Sequence    

Annotation

kegg
ID rcu:RCOM_0906480
description hypothetical protein
nr
ID XP_002518567.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RXU8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0906480 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18396: 18976-19320 , PASA_asmbl_18397: 20281-20458 , PASA_asmbl_18398: 20674-21406 , PASA_asmbl_18399: 21638-21876
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001864_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005797_030 0.0741247706 - - PREDICTED: MATE efflux family protein LAL5-like [Jatropha curcas]
3 Hb_029508_030 0.0911165758 transcription factor TF Family: C2H2 hypothetical protein POPTR_0002s04880g [Populus trichocarpa]
4 Hb_002007_230 0.0948786672 - - PREDICTED: probable linoleate 9S-lipoxygenase 5 [Jatropha curcas]
5 Hb_000221_170 0.0961384172 - - PREDICTED: alcohol dehydrogenase-like 2 [Jatropha curcas]
6 Hb_000286_190 0.0964608668 - - PREDICTED: probable receptor-like protein kinase At1g11050 [Jatropha curcas]
7 Hb_008503_020 0.1038787671 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
8 Hb_005489_160 0.106982828 - - PREDICTED: primary amine oxidase-like [Jatropha curcas]
9 Hb_000920_360 0.1091175276 - - PREDICTED: (R,S)-reticuline 7-O-methyltransferase-like [Jatropha curcas]
10 Hb_151364_010 0.1143049178 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
11 Hb_003086_200 0.1144193976 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
12 Hb_012395_070 0.1287211052 - - PREDICTED: probable metal-nicotianamine transporter YSL6 [Jatropha curcas]
13 Hb_000556_200 0.1303850578 - - PREDICTED: AT-hook motif nuclear-localized protein 22 [Jatropha curcas]
14 Hb_001489_030 0.1312285342 - - PREDICTED: protein NRT1/ PTR FAMILY 4.6 [Jatropha curcas]
15 Hb_001709_070 0.1313320406 - - carbohydrate binding protein, putative [Ricinus communis]
16 Hb_000876_050 0.1326089548 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like [Jatropha curcas]
17 Hb_001104_280 0.1397188792 - - PREDICTED: UPF0481 protein At3g47200 [Jatropha curcas]
18 Hb_000300_570 0.1437005744 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
19 Hb_000265_010 0.1446686011 - - amino acid transporter, putative [Ricinus communis]
20 Hb_000043_080 0.1476483579 - - lipid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001864_010 Hb_001864_010 Hb_005797_030 Hb_005797_030 Hb_001864_010--Hb_005797_030 Hb_029508_030 Hb_029508_030 Hb_001864_010--Hb_029508_030 Hb_002007_230 Hb_002007_230 Hb_001864_010--Hb_002007_230 Hb_000221_170 Hb_000221_170 Hb_001864_010--Hb_000221_170 Hb_000286_190 Hb_000286_190 Hb_001864_010--Hb_000286_190 Hb_008503_020 Hb_008503_020 Hb_001864_010--Hb_008503_020 Hb_005797_030--Hb_002007_230 Hb_000920_360 Hb_000920_360 Hb_005797_030--Hb_000920_360 Hb_001104_280 Hb_001104_280 Hb_005797_030--Hb_001104_280 Hb_003086_200 Hb_003086_200 Hb_005797_030--Hb_003086_200 Hb_005797_030--Hb_000286_190 Hb_029508_030--Hb_000286_190 Hb_029508_030--Hb_000221_170 Hb_029508_030--Hb_000920_360 Hb_001709_070 Hb_001709_070 Hb_029508_030--Hb_001709_070 Hb_000876_050 Hb_000876_050 Hb_029508_030--Hb_000876_050 Hb_002007_230--Hb_003086_200 Hb_000300_570 Hb_000300_570 Hb_002007_230--Hb_000300_570 Hb_000265_010 Hb_000265_010 Hb_002007_230--Hb_000265_010 Hb_151364_010 Hb_151364_010 Hb_002007_230--Hb_151364_010 Hb_000221_170--Hb_000876_050 Hb_005489_160 Hb_005489_160 Hb_000221_170--Hb_005489_160 Hb_000221_170--Hb_001709_070 Hb_005333_100 Hb_005333_100 Hb_000221_170--Hb_005333_100 Hb_000286_190--Hb_000920_360 Hb_004574_010 Hb_004574_010 Hb_000286_190--Hb_004574_010 Hb_000608_450 Hb_000608_450 Hb_000286_190--Hb_000608_450 Hb_001489_030 Hb_001489_030 Hb_008503_020--Hb_001489_030 Hb_008503_020--Hb_001709_070 Hb_008503_020--Hb_003086_200 Hb_012053_030 Hb_012053_030 Hb_008503_020--Hb_012053_030 Hb_008053_070 Hb_008053_070 Hb_008503_020--Hb_008053_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0497407 23.9722 0.578734 1.78093 0.0302743 0.0922178
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0478998 0.0565322 0 34.8194 4.33381

CAGE analysis