Hb_001864_060

Information

Type transcription factor
Description TF Family: GeBP
Location Contig1864: 47639-48859
Sequence    

Annotation

kegg
ID rcu:RCOM_0906550
description transcription regulator, putative
nr
ID XP_012077335.1
description PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
swissprot
ID Q9SB42
description Mediator-associated protein 1 OS=Arabidopsis thaliana GN=At4g25210 PE=1 SV=1
trembl
ID A0A067LAY0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17238 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18405: 47542-49191 , PASA_asmbl_18407: 47542-68914
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001864_060 0.0 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
2 Hb_004109_030 0.0735248125 - - conserved hypothetical protein [Ricinus communis]
3 Hb_008511_090 0.074802597 - - PREDICTED: BTB/POZ domain-containing protein At3g05675-like [Jatropha curcas]
4 Hb_003752_100 0.0809527576 - - PREDICTED: FRIGIDA-like protein 3 [Jatropha curcas]
5 Hb_116086_010 0.0811692418 - - hypothetical protein JCGZ_14829 [Jatropha curcas]
6 Hb_001828_130 0.085312491 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
7 Hb_000025_330 0.0860735276 - - hypothetical protein JCGZ_22759 [Jatropha curcas]
8 Hb_003373_040 0.088603601 - - hypothetical protein ARALYDRAFT_356474 [Arabidopsis lyrata subsp. lyrata]
9 Hb_011491_010 0.0899852058 - - Protein YME1, putative [Ricinus communis]
10 Hb_076693_020 0.0910671633 - - hypothetical protein CISIN_1g0121812mg, partial [Citrus sinensis]
11 Hb_002078_220 0.091205754 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X1 [Jatropha curcas]
12 Hb_000322_150 0.091426906 transcription factor TF Family: TRAF PREDICTED: regulatory protein NPR1 isoform X1 [Jatropha curcas]
13 Hb_003175_030 0.0932893457 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
14 Hb_002005_110 0.0948299152 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X5 [Jatropha curcas]
15 Hb_004767_050 0.0982035833 - - PREDICTED: glycosyltransferase family protein 64 C3-like [Jatropha curcas]
16 Hb_000070_080 0.0982597991 - - PREDICTED: uncharacterized protein LOC105645742 isoform X2 [Jatropha curcas]
17 Hb_012564_030 0.0984679965 - - coronatine-insensitive 1 [Hevea brasiliensis]
18 Hb_005541_010 0.0986788299 - - PREDICTED: uncharacterized protein LOC105629250 [Jatropha curcas]
19 Hb_155396_010 0.0989233549 - - TMV resistance protein N, putative [Ricinus communis]
20 Hb_001123_290 0.0990047287 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3 [Jatropha curcas]

Gene co-expression network

sample Hb_001864_060 Hb_001864_060 Hb_004109_030 Hb_004109_030 Hb_001864_060--Hb_004109_030 Hb_008511_090 Hb_008511_090 Hb_001864_060--Hb_008511_090 Hb_003752_100 Hb_003752_100 Hb_001864_060--Hb_003752_100 Hb_116086_010 Hb_116086_010 Hb_001864_060--Hb_116086_010 Hb_001828_130 Hb_001828_130 Hb_001864_060--Hb_001828_130 Hb_000025_330 Hb_000025_330 Hb_001864_060--Hb_000025_330 Hb_004109_030--Hb_008511_090 Hb_003082_010 Hb_003082_010 Hb_004109_030--Hb_003082_010 Hb_003373_040 Hb_003373_040 Hb_004109_030--Hb_003373_040 Hb_002890_090 Hb_002890_090 Hb_004109_030--Hb_002890_090 Hb_000070_080 Hb_000070_080 Hb_004109_030--Hb_000070_080 Hb_000941_130 Hb_000941_130 Hb_004109_030--Hb_000941_130 Hb_008511_090--Hb_000070_080 Hb_001005_190 Hb_001005_190 Hb_008511_090--Hb_001005_190 Hb_007163_120 Hb_007163_120 Hb_008511_090--Hb_007163_120 Hb_000479_220 Hb_000479_220 Hb_008511_090--Hb_000479_220 Hb_002078_220 Hb_002078_220 Hb_008511_090--Hb_002078_220 Hb_003752_100--Hb_003082_010 Hb_003752_100--Hb_004109_030 Hb_003175_030 Hb_003175_030 Hb_003752_100--Hb_003175_030 Hb_003752_100--Hb_001828_130 Hb_012055_060 Hb_012055_060 Hb_003752_100--Hb_012055_060 Hb_001123_290 Hb_001123_290 Hb_116086_010--Hb_001123_290 Hb_000832_030 Hb_000832_030 Hb_116086_010--Hb_000832_030 Hb_002005_110 Hb_002005_110 Hb_116086_010--Hb_002005_110 Hb_003411_110 Hb_003411_110 Hb_116086_010--Hb_003411_110 Hb_155396_010 Hb_155396_010 Hb_116086_010--Hb_155396_010 Hb_011491_010 Hb_011491_010 Hb_001828_130--Hb_011491_010 Hb_002798_070 Hb_002798_070 Hb_001828_130--Hb_002798_070 Hb_000243_250 Hb_000243_250 Hb_001828_130--Hb_000243_250 Hb_000322_150 Hb_000322_150 Hb_001828_130--Hb_000322_150 Hb_002636_100 Hb_002636_100 Hb_001828_130--Hb_002636_100 Hb_012564_030 Hb_012564_030 Hb_001828_130--Hb_012564_030 Hb_000140_070 Hb_000140_070 Hb_000025_330--Hb_000140_070 Hb_001247_120 Hb_001247_120 Hb_000025_330--Hb_001247_120 Hb_001054_030 Hb_001054_030 Hb_000025_330--Hb_001054_030 Hb_000525_010 Hb_000525_010 Hb_000025_330--Hb_000525_010 Hb_000025_330--Hb_001123_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
211.438 391.276 125.903 162.759 151.958 258.943
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
181.286 183.367 190.203 132.129 73.108

CAGE analysis