Hb_001864_070

Information

Type -
Description -
Location Contig1864: 67872-68867
Sequence    

Annotation

kegg
ID rcu:RCOM_0906540
description histone h2a, putative
nr
ID XP_012091427.1
description PREDICTED: probable histone H2A.3 [Jatropha curcas]
swissprot
ID Q43312
description Protein H2A.7 OS=Triticum aestivum GN=H2A-4 PE=2 SV=3
trembl
ID A0A067JDJ8
description Histone H2A OS=Jatropha curcas GN=JCGZ_21294 PE=3 SV=1
Gene Ontology
ID GO:0000786
description probable histone

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18407: 47542-68914
cDNA
(Sanger)
(ID:Location)		 046_E02.ab1: 67961-68599

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001864_070 0.0 - - PREDICTED: probable histone H2A.3 [Jatropha curcas]
2 Hb_001898_240 0.0790812803 - - PREDICTED: uncharacterized protein LOC105779688 [Gossypium raimondii]
3 Hb_002217_110 0.0950077543 - - PREDICTED: craniofacial development protein 1 [Jatropha curcas]
4 Hb_001699_210 0.0978157317 - - PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 isoform X1 [Jatropha curcas]
5 Hb_002553_040 0.0998636257 - - PREDICTED: transcription factor bHLH104 [Jatropha curcas]
6 Hb_008225_090 0.1009003135 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Jatropha curcas]
7 Hb_000010_110 0.102061116 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Jatropha curcas]
8 Hb_000009_530 0.103680887 - - PREDICTED: uncharacterized protein LOC105639628 [Jatropha curcas]
9 Hb_000144_100 0.1049111263 - - PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial [Jatropha curcas]
10 Hb_000610_010 0.1051505305 - - PREDICTED: SKP1-like protein 1B [Musa acuminata subsp. malaccensis]
11 Hb_021576_040 0.1070520678 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001586_040 0.1080239491 - - hypothetical protein JCGZ_17187 [Jatropha curcas]
13 Hb_001671_040 0.1082306844 - - PREDICTED: serine/arginine-rich splicing factor RS31-like isoform X1 [Populus euphratica]
14 Hb_153553_030 0.1089830256 - - PREDICTED: zinc finger protein GIS2 [Jatropha curcas]
15 Hb_009659_050 0.1097345575 - - PREDICTED: putative hydrolase C777.06c isoform X2 [Jatropha curcas]
16 Hb_000373_050 0.1126155207 - - PREDICTED: protein WHI3 [Jatropha curcas]
17 Hb_003935_020 0.1129423191 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_000487_210 0.113473621 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
19 Hb_003647_140 0.1139652792 - - PREDICTED: uncharacterized protein LOC105646673 [Jatropha curcas]
20 Hb_006615_050 0.1140926169 - - PREDICTED: uncharacterized protein LOC105640686 [Jatropha curcas]

Gene co-expression network

sample Hb_001864_070 Hb_001864_070 Hb_001898_240 Hb_001898_240 Hb_001864_070--Hb_001898_240 Hb_002217_110 Hb_002217_110 Hb_001864_070--Hb_002217_110 Hb_001699_210 Hb_001699_210 Hb_001864_070--Hb_001699_210 Hb_002553_040 Hb_002553_040 Hb_001864_070--Hb_002553_040 Hb_008225_090 Hb_008225_090 Hb_001864_070--Hb_008225_090 Hb_000010_110 Hb_000010_110 Hb_001864_070--Hb_000010_110 Hb_006261_090 Hb_006261_090 Hb_001898_240--Hb_006261_090 Hb_000009_530 Hb_000009_530 Hb_001898_240--Hb_000009_530 Hb_002228_110 Hb_002228_110 Hb_001898_240--Hb_002228_110 Hb_000610_010 Hb_000610_010 Hb_001898_240--Hb_000610_010 Hb_003621_020 Hb_003621_020 Hb_001898_240--Hb_003621_020 Hb_004837_180 Hb_004837_180 Hb_002217_110--Hb_004837_180 Hb_000260_680 Hb_000260_680 Hb_002217_110--Hb_000260_680 Hb_001456_060 Hb_001456_060 Hb_002217_110--Hb_001456_060 Hb_012384_030 Hb_012384_030 Hb_002217_110--Hb_012384_030 Hb_003929_280 Hb_003929_280 Hb_002217_110--Hb_003929_280 Hb_001776_060 Hb_001776_060 Hb_002217_110--Hb_001776_060 Hb_001675_300 Hb_001675_300 Hb_001699_210--Hb_001675_300 Hb_065755_030 Hb_065755_030 Hb_001699_210--Hb_065755_030 Hb_000392_230 Hb_000392_230 Hb_001699_210--Hb_000392_230 Hb_006615_050 Hb_006615_050 Hb_001699_210--Hb_006615_050 Hb_007007_040 Hb_007007_040 Hb_001699_210--Hb_007007_040 Hb_002553_040--Hb_000010_110 Hb_003020_270 Hb_003020_270 Hb_002553_040--Hb_003020_270 Hb_000886_050 Hb_000886_050 Hb_002553_040--Hb_000886_050 Hb_000522_150 Hb_000522_150 Hb_002553_040--Hb_000522_150 Hb_000487_210 Hb_000487_210 Hb_002553_040--Hb_000487_210 Hb_005116_060 Hb_005116_060 Hb_002553_040--Hb_005116_060 Hb_002092_120 Hb_002092_120 Hb_008225_090--Hb_002092_120 Hb_000270_470 Hb_000270_470 Hb_008225_090--Hb_000270_470 Hb_000270_310 Hb_000270_310 Hb_008225_090--Hb_000270_310 Hb_008225_090--Hb_000010_110 Hb_000176_020 Hb_000176_020 Hb_008225_090--Hb_000176_020 Hb_001025_090 Hb_001025_090 Hb_008225_090--Hb_001025_090 Hb_001953_070 Hb_001953_070 Hb_000010_110--Hb_001953_070 Hb_003001_080 Hb_003001_080 Hb_000010_110--Hb_003001_080 Hb_000010_110--Hb_000522_150 Hb_005271_220 Hb_005271_220 Hb_000010_110--Hb_005271_220 Hb_000010_110--Hb_002217_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.7009 12.7633 18.5024 10.5432 17.0611 8.99571
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.8397 21.015 4.92359 6.19031 9.25223

CAGE analysis