Hb_001864_090

Information

Type -
Description -
Location Contig1864: 68971-73925
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18407: 47542-68914
cDNA
(Sanger)
(ID:Location)		 046_E02.ab1: 67961-68599

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001864_090 0.0 - - -
2 Hb_000946_160 0.1479507168 transcription factor TF Family: GNAT PREDICTED: uncharacterized N-acetyltransferase ycf52 [Jatropha curcas]
3 Hb_001922_180 0.2664626652 - - hevamine-A precursor, putative [Ricinus communis]
4 Hb_005489_010 0.2687212841 - - hypothetical protein POPTR_0011s11420g [Populus trichocarpa]
5 Hb_003206_100 0.2738688532 - - -
6 Hb_002025_210 0.275375622 - - -
7 Hb_021888_040 0.2755407758 - - PREDICTED: uncharacterized protein LOC103499290 isoform X2 [Cucumis melo]
8 Hb_003996_030 0.2780750719 - - -
9 Hb_009051_020 0.2826651993 - - Thioredoxin O1 [Morus notabilis]
10 Hb_000329_260 0.2868269509 - - hypothetical protein MIMGU_mgv1a016162mg [Erythranthe guttata]
11 Hb_000665_110 0.2869322269 - - Ribosomal protein S11-beta [Theobroma cacao]
12 Hb_001979_030 0.2885198317 - - hypothetical protein POPTR_0016s06130g [Populus trichocarpa]
13 Hb_033870_010 0.2893925969 - - PREDICTED: uncharacterized protein LOC104101109 isoform X1 [Nicotiana tomentosiformis]
14 Hb_003551_010 0.2895524007 - - hypothetical protein CISIN_1g030786mg [Citrus sinensis]
15 Hb_001233_020 0.2924347525 - - hypothetical protein JCGZ_04109 [Jatropha curcas]
16 Hb_000562_060 0.2931362619 - - PREDICTED: uncharacterized protein LOC105169741 [Sesamum indicum]
17 Hb_000261_170 0.2934399981 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
18 Hb_007273_020 0.294654031 - - PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Cicer arietinum]
19 Hb_078804_010 0.2984939589 - - kinase, putative [Ricinus communis]
20 Hb_001828_100 0.3008580357 - - PREDICTED: death-associated protein kinase dapk-1 [Jatropha curcas]

Gene co-expression network

sample Hb_001864_090 Hb_001864_090 Hb_000946_160 Hb_000946_160 Hb_001864_090--Hb_000946_160 Hb_001922_180 Hb_001922_180 Hb_001864_090--Hb_001922_180 Hb_005489_010 Hb_005489_010 Hb_001864_090--Hb_005489_010 Hb_003206_100 Hb_003206_100 Hb_001864_090--Hb_003206_100 Hb_002025_210 Hb_002025_210 Hb_001864_090--Hb_002025_210 Hb_021888_040 Hb_021888_040 Hb_001864_090--Hb_021888_040 Hb_000946_160--Hb_021888_040 Hb_003996_030 Hb_003996_030 Hb_000946_160--Hb_003996_030 Hb_000243_370 Hb_000243_370 Hb_000946_160--Hb_000243_370 Hb_000261_170 Hb_000261_170 Hb_000946_160--Hb_000261_170 Hb_000946_160--Hb_003206_100 Hb_033376_010 Hb_033376_010 Hb_001922_180--Hb_033376_010 Hb_001205_160 Hb_001205_160 Hb_001922_180--Hb_001205_160 Hb_000975_180 Hb_000975_180 Hb_001922_180--Hb_000975_180 Hb_000130_100 Hb_000130_100 Hb_001922_180--Hb_000130_100 Hb_000032_050 Hb_000032_050 Hb_001922_180--Hb_000032_050 Hb_003502_100 Hb_003502_100 Hb_001922_180--Hb_003502_100 Hb_005489_010--Hb_002025_210 Hb_002344_120 Hb_002344_120 Hb_005489_010--Hb_002344_120 Hb_000665_110 Hb_000665_110 Hb_005489_010--Hb_000665_110 Hb_000562_060 Hb_000562_060 Hb_005489_010--Hb_000562_060 Hb_150766_020 Hb_150766_020 Hb_005489_010--Hb_150766_020 Hb_001233_020 Hb_001233_020 Hb_005489_010--Hb_001233_020 Hb_009051_020 Hb_009051_020 Hb_003206_100--Hb_009051_020 Hb_003551_010 Hb_003551_010 Hb_003206_100--Hb_003551_010 Hb_007273_020 Hb_007273_020 Hb_003206_100--Hb_007273_020 Hb_003206_100--Hb_021888_040 Hb_011200_010 Hb_011200_010 Hb_003206_100--Hb_011200_010 Hb_002656_020 Hb_002656_020 Hb_003206_100--Hb_002656_020 Hb_002025_210--Hb_002344_120 Hb_000994_110 Hb_000994_110 Hb_002025_210--Hb_000994_110 Hb_002025_210--Hb_000665_110 Hb_013492_010 Hb_013492_010 Hb_002025_210--Hb_013492_010 Hb_002025_210--Hb_150766_020 Hb_002379_040 Hb_002379_040 Hb_021888_040--Hb_002379_040 Hb_021888_040--Hb_011200_010 Hb_021888_040--Hb_009051_020 Hb_021888_040--Hb_003551_010 Hb_059978_010 Hb_059978_010 Hb_021888_040--Hb_059978_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.259312 0 0 2.0609 0.141132 0.261675
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.682 0.803523 0 0.056581 0

CAGE analysis