Hb_001865_040

Information

Type -
Description -
Location Contig1865: 46394-50014
Sequence    

Annotation

kegg
ID pop:POPTR_0013s02830g
description hypothetical protein
nr
ID XP_006375780.1
description hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FWB6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s02830g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18416: 46068-48739 , PASA_asmbl_18417: 47162-47269 , PASA_asmbl_18418: 49068-49718
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001865_040 0.0 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
2 Hb_005333_030 0.148619403 - - hypothetical protein JCGZ_15866 [Jatropha curcas]
3 Hb_000336_270 0.1541313366 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
4 Hb_002742_080 0.1546197701 - - unknown [Populus trichocarpa]
5 Hb_001882_040 0.154731671 - - PREDICTED: probable hydroxyacylglutathione hydrolase 2, chloroplast [Jatropha curcas]
6 Hb_002783_010 0.1557659247 - - PREDICTED: uncharacterized protein LOC105635318 [Jatropha curcas]
7 Hb_002081_120 0.1594026132 - - PREDICTED: magnesium transporter MRS2-3 [Jatropha curcas]
8 Hb_018202_050 0.1606575234 - - PREDICTED: tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A [Jatropha curcas]
9 Hb_001218_050 0.1612994845 - - Ribosome-binding protein, putative [Ricinus communis]
10 Hb_000336_110 0.1615338996 - - Uracil phosphoribosyltransferase, putative [Ricinus communis]
11 Hb_000363_280 0.1650202892 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: angiomotin [Cucumis sativus]
12 Hb_000059_200 0.165734415 - - PREDICTED: WEB family protein At2g38370-like [Jatropha curcas]
13 Hb_000317_060 0.1675347963 - - PREDICTED: uncharacterized protein LOC105647051 [Jatropha curcas]
14 Hb_001269_200 0.1694203602 - - pentatricopeptide repeat-containing family protein [Populus trichocarpa]
15 Hb_000165_140 0.169585624 - - PREDICTED: inactive receptor-like serine/threonine-protein kinase At2g40270 isoform X2 [Populus euphratica]
16 Hb_010053_040 0.1701964027 - - PREDICTED: ras-related protein Rab11D [Jatropha curcas]
17 Hb_002000_060 0.1715366056 - - PREDICTED: protein LIKE COV 2 [Jatropha curcas]
18 Hb_000985_040 0.1720590067 transcription factor TF Family: Orphans B-box type zinc finger protein with CCT domain isoform 1 [Theobroma cacao]
19 Hb_000735_050 0.1721266735 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]
20 Hb_011918_050 0.1740566215 - - -

Gene co-expression network

sample Hb_001865_040 Hb_001865_040 Hb_005333_030 Hb_005333_030 Hb_001865_040--Hb_005333_030 Hb_000336_270 Hb_000336_270 Hb_001865_040--Hb_000336_270 Hb_002742_080 Hb_002742_080 Hb_001865_040--Hb_002742_080 Hb_001882_040 Hb_001882_040 Hb_001865_040--Hb_001882_040 Hb_002783_010 Hb_002783_010 Hb_001865_040--Hb_002783_010 Hb_002081_120 Hb_002081_120 Hb_001865_040--Hb_002081_120 Hb_002666_080 Hb_002666_080 Hb_005333_030--Hb_002666_080 Hb_003710_040 Hb_003710_040 Hb_005333_030--Hb_003710_040 Hb_167381_020 Hb_167381_020 Hb_005333_030--Hb_167381_020 Hb_004017_040 Hb_004017_040 Hb_005333_030--Hb_004017_040 Hb_118840_050 Hb_118840_050 Hb_005333_030--Hb_118840_050 Hb_000261_290 Hb_000261_290 Hb_005333_030--Hb_000261_290 Hb_002000_060 Hb_002000_060 Hb_000336_270--Hb_002000_060 Hb_080147_040 Hb_080147_040 Hb_000336_270--Hb_080147_040 Hb_000336_270--Hb_001882_040 Hb_001163_120 Hb_001163_120 Hb_000336_270--Hb_001163_120 Hb_000563_600 Hb_000563_600 Hb_000336_270--Hb_000563_600 Hb_009780_100 Hb_009780_100 Hb_000336_270--Hb_009780_100 Hb_001052_040 Hb_001052_040 Hb_002742_080--Hb_001052_040 Hb_002742_080--Hb_005333_030 Hb_002742_080--Hb_003710_040 Hb_002742_080--Hb_000261_290 Hb_128376_010 Hb_128376_010 Hb_002742_080--Hb_128376_010 Hb_002320_070 Hb_002320_070 Hb_002742_080--Hb_002320_070 Hb_011609_170 Hb_011609_170 Hb_001882_040--Hb_011609_170 Hb_001910_020 Hb_001910_020 Hb_001882_040--Hb_001910_020 Hb_001882_040--Hb_001163_120 Hb_035318_010 Hb_035318_010 Hb_001882_040--Hb_035318_010 Hb_000031_280 Hb_000031_280 Hb_001882_040--Hb_000031_280 Hb_118720_010 Hb_118720_010 Hb_002783_010--Hb_118720_010 Hb_002783_010--Hb_002742_080 Hb_015354_010 Hb_015354_010 Hb_002783_010--Hb_015354_010 Hb_000152_670 Hb_000152_670 Hb_002783_010--Hb_000152_670 Hb_002783_010--Hb_001052_040 Hb_000046_070 Hb_000046_070 Hb_002081_120--Hb_000046_070 Hb_003470_030 Hb_003470_030 Hb_002081_120--Hb_003470_030 Hb_002081_120--Hb_002666_080 Hb_001489_100 Hb_001489_100 Hb_002081_120--Hb_001489_100 Hb_001033_050 Hb_001033_050 Hb_002081_120--Hb_001033_050 Hb_002477_250 Hb_002477_250 Hb_002081_120--Hb_002477_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.1757 11.5359 9.76708 8.63556 6.06698 10.3744
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.9708 0.795184 0.64292 4.17517 2.36646

CAGE analysis