Hb_001865_060

Information

Type -
Description -
Location Contig1865: 78816-89540
Sequence    

Annotation

kegg
ID rcu:RCOM_0464910
description hypothetical protein
nr
ID XP_012089581.1
description PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L9A3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01497 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18420: 82681-83137
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001865_060 0.0 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
2 Hb_001141_360 0.0809592471 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
3 Hb_012725_040 0.0890510474 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
4 Hb_000062_080 0.0924008613 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR11-like [Jatropha curcas]
5 Hb_002485_040 0.0967812382 - - PREDICTED: uncharacterized protein LOC105637426 [Jatropha curcas]
6 Hb_003494_060 0.1003092149 - - PREDICTED: uncharacterized protein LOC105644062 isoform X1 [Jatropha curcas]
7 Hb_004032_310 0.1009221756 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 14 [Jatropha curcas]
8 Hb_006111_030 0.1009393788 - - PREDICTED: phospholipase A(1) LCAT3 isoform X1 [Jatropha curcas]
9 Hb_000123_350 0.1012392807 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
10 Hb_000448_060 0.105201609 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
11 Hb_000010_350 0.113577637 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
12 Hb_001231_080 0.1182476912 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like isoform X1 [Fragaria vesca subsp. vesca]
13 Hb_127599_010 0.1190861401 - - hypothetical protein CISIN_1g0010462mg, partial [Citrus sinensis]
14 Hb_001489_120 0.1212917825 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
15 Hb_001258_150 0.1212991277 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
16 Hb_125126_010 0.1233952163 desease resistance Gene Name: NB-ARC resistance family protein [Populus trichocarpa]
17 Hb_003120_050 0.1250629643 - - PREDICTED: uncharacterized protein LOC105635312 [Jatropha curcas]
18 Hb_185513_010 0.129070309 - - conserved hypothetical protein [Ricinus communis]
19 Hb_009897_020 0.1304915444 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
20 Hb_000465_080 0.1311450207 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Jatropha curcas]

Gene co-expression network

sample Hb_001865_060 Hb_001865_060 Hb_001141_360 Hb_001141_360 Hb_001865_060--Hb_001141_360 Hb_012725_040 Hb_012725_040 Hb_001865_060--Hb_012725_040 Hb_000062_080 Hb_000062_080 Hb_001865_060--Hb_000062_080 Hb_002485_040 Hb_002485_040 Hb_001865_060--Hb_002485_040 Hb_003494_060 Hb_003494_060 Hb_001865_060--Hb_003494_060 Hb_004032_310 Hb_004032_310 Hb_001865_060--Hb_004032_310 Hb_001141_360--Hb_003494_060 Hb_001141_360--Hb_000062_080 Hb_003120_050 Hb_003120_050 Hb_001141_360--Hb_003120_050 Hb_001141_360--Hb_012725_040 Hb_012226_010 Hb_012226_010 Hb_001141_360--Hb_012226_010 Hb_185513_010 Hb_185513_010 Hb_012725_040--Hb_185513_010 Hb_006111_030 Hb_006111_030 Hb_012725_040--Hb_006111_030 Hb_001258_150 Hb_001258_150 Hb_012725_040--Hb_001258_150 Hb_012725_040--Hb_003494_060 Hb_127599_010 Hb_127599_010 Hb_000062_080--Hb_127599_010 Hb_000448_060 Hb_000448_060 Hb_000062_080--Hb_000448_060 Hb_000802_190 Hb_000802_190 Hb_000062_080--Hb_000802_190 Hb_000010_350 Hb_000010_350 Hb_000062_080--Hb_000010_350 Hb_000123_350 Hb_000123_350 Hb_002485_040--Hb_000123_350 Hb_012082_010 Hb_012082_010 Hb_002485_040--Hb_012082_010 Hb_002774_150 Hb_002774_150 Hb_002485_040--Hb_002774_150 Hb_125126_010 Hb_125126_010 Hb_002485_040--Hb_125126_010 Hb_000896_060 Hb_000896_060 Hb_002485_040--Hb_000896_060 Hb_000483_040 Hb_000483_040 Hb_003494_060--Hb_000483_040 Hb_009838_060 Hb_009838_060 Hb_003494_060--Hb_009838_060 Hb_003494_060--Hb_000062_080 Hb_003752_120 Hb_003752_120 Hb_004032_310--Hb_003752_120 Hb_004032_310--Hb_000448_060 Hb_001489_120 Hb_001489_120 Hb_004032_310--Hb_001489_120 Hb_001662_170 Hb_001662_170 Hb_004032_310--Hb_001662_170 Hb_004994_300 Hb_004994_300 Hb_004032_310--Hb_004994_300 Hb_002915_070 Hb_002915_070 Hb_004032_310--Hb_002915_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.428535 2.56909 0.486539 0.432485 0.4255 0.430396
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.215393 0.177215 0.17778 0.469785 0.297576

CAGE analysis