Hb_001865_070

Information

Type -
Description -
Location Contig1865: 92645-118657
Sequence    

Annotation

kegg
ID rcu:RCOM_0465040
description hypothetical protein
nr
ID XP_012089552.1
description PREDICTED: uncharacterized protein LOC105647937 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SR29
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0465040 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18422: 93735-96045 , PASA_asmbl_18423: 96084-103217 , PASA_asmbl_18424: 100027-103291 , PASA_asmbl_18426: 104191-104620 , PASA_asmbl_18427: 111089-118342
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001865_070 0.0 - - PREDICTED: uncharacterized protein LOC105647937 isoform X1 [Jatropha curcas]
2 Hb_002686_090 0.0654555002 - - PREDICTED: pentatricopeptide repeat-containing protein At4g13650 [Jatropha curcas]
3 Hb_007441_160 0.0701248564 - - RNA binding protein, putative [Ricinus communis]
4 Hb_005977_070 0.0744280455 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
5 Hb_000672_040 0.0785339824 - - PREDICTED: ENHANCER OF AG-4 protein 2 [Jatropha curcas]
6 Hb_005736_020 0.0792666824 - - hypothetical protein POPTR_0005s20940g [Populus trichocarpa]
7 Hb_001157_240 0.0795981921 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
8 Hb_000204_120 0.0801128638 - - PREDICTED: uncharacterized protein LOC105639239 [Jatropha curcas]
9 Hb_012506_040 0.0804965275 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105637346 [Jatropha curcas]
10 Hb_002316_160 0.0812971288 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640422 [Jatropha curcas]
11 Hb_004374_110 0.0815050689 - - PREDICTED: uncharacterized protein LOC105645768 [Jatropha curcas]
12 Hb_012725_060 0.0815832057 - - protein binding protein, putative [Ricinus communis]
13 Hb_005582_040 0.083585111 - - PREDICTED: regulator of nonsense transcripts 1 homolog [Jatropha curcas]
14 Hb_001999_090 0.0851310656 - - PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic [Jatropha curcas]
15 Hb_002768_060 0.0853212695 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X1 [Jatropha curcas]
16 Hb_000640_040 0.0856338513 - - PREDICTED: bromodomain and WD repeat-containing protein 1 isoform X2 [Jatropha curcas]
17 Hb_027472_070 0.0856908099 - - PREDICTED: uncharacterized protein LOC105646172 [Jatropha curcas]
18 Hb_011671_410 0.0862245544 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
19 Hb_000130_490 0.0869643618 - - PREDICTED: uncharacterized protein LOC105637408 isoform X2 [Jatropha curcas]
20 Hb_000017_220 0.0879521279 - - PREDICTED: uncharacterized protein LOC105645768 [Jatropha curcas]

Gene co-expression network

sample Hb_001865_070 Hb_001865_070 Hb_002686_090 Hb_002686_090 Hb_001865_070--Hb_002686_090 Hb_007441_160 Hb_007441_160 Hb_001865_070--Hb_007441_160 Hb_005977_070 Hb_005977_070 Hb_001865_070--Hb_005977_070 Hb_000672_040 Hb_000672_040 Hb_001865_070--Hb_000672_040 Hb_005736_020 Hb_005736_020 Hb_001865_070--Hb_005736_020 Hb_001157_240 Hb_001157_240 Hb_001865_070--Hb_001157_240 Hb_000640_040 Hb_000640_040 Hb_002686_090--Hb_000640_040 Hb_000204_120 Hb_000204_120 Hb_002686_090--Hb_000204_120 Hb_001716_040 Hb_001716_040 Hb_002686_090--Hb_001716_040 Hb_002542_110 Hb_002542_110 Hb_002686_090--Hb_002542_110 Hb_000170_130 Hb_000170_130 Hb_002686_090--Hb_000170_130 Hb_005186_040 Hb_005186_040 Hb_007441_160--Hb_005186_040 Hb_007441_160--Hb_000672_040 Hb_001999_290 Hb_001999_290 Hb_007441_160--Hb_001999_290 Hb_007441_160--Hb_000640_040 Hb_012244_020 Hb_012244_020 Hb_007441_160--Hb_012244_020 Hb_004204_010 Hb_004204_010 Hb_005977_070--Hb_004204_010 Hb_023344_160 Hb_023344_160 Hb_005977_070--Hb_023344_160 Hb_009658_030 Hb_009658_030 Hb_005977_070--Hb_009658_030 Hb_066920_030 Hb_066920_030 Hb_005977_070--Hb_066920_030 Hb_004705_020 Hb_004705_020 Hb_005977_070--Hb_004705_020 Hb_000017_220 Hb_000017_220 Hb_005977_070--Hb_000017_220 Hb_000672_040--Hb_005186_040 Hb_000672_040--Hb_005736_020 Hb_001227_080 Hb_001227_080 Hb_000672_040--Hb_001227_080 Hb_011671_410 Hb_011671_410 Hb_000672_040--Hb_011671_410 Hb_005486_030 Hb_005486_030 Hb_000672_040--Hb_005486_030 Hb_005686_090 Hb_005686_090 Hb_005736_020--Hb_005686_090 Hb_005736_020--Hb_001157_240 Hb_005736_020--Hb_001999_290 Hb_001004_060 Hb_001004_060 Hb_005736_020--Hb_001004_060 Hb_001008_120 Hb_001008_120 Hb_005736_020--Hb_001008_120 Hb_005736_020--Hb_000204_120 Hb_001157_240--Hb_001999_290 Hb_003943_110 Hb_003943_110 Hb_001157_240--Hb_003943_110 Hb_005582_040 Hb_005582_040 Hb_001157_240--Hb_005582_040 Hb_001157_240--Hb_000640_040 Hb_001157_240--Hb_001008_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.88914 3.84201 1.36794 2.87339 1.89012 2.20218
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.92495 1.94172 3.81044 3.55003 5.05898

CAGE analysis