Hb_001865_090

Information

Type -
Description -
Location Contig1865: 124145-126646
Sequence    

Annotation

kegg
ID vvi:100251241
description zinc finger protein GIS2
nr
ID CAN79118.1
description hypothetical protein VITISV_005773 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5BND0
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_005773 PE=4 SV=1
Gene Ontology
ID GO:0003677
description zinc finger protein gis2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18429: 123457-126583 , PASA_asmbl_18430: 125398-125498 , PASA_asmbl_18431: 125969-126500
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001865_090 0.0 - - hypothetical protein VITISV_005773 [Vitis vinifera]
2 Hb_000029_070 0.100976547 - - PREDICTED: cold-inducible RNA-binding protein B-like [Jatropha curcas]
3 Hb_166574_010 0.1050111088 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
4 Hb_008147_090 0.1050378521 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001754_080 0.1141694324 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]
6 Hb_000120_770 0.1148215822 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001489_110 0.1189260255 - - PREDICTED: mitochondrial outer membrane protein porin of 36 kDa-like [Citrus sinensis]
8 Hb_119316_010 0.1241240063 - - tryptophan biosynthesis protein, putative [Ricinus communis]
9 Hb_045003_010 0.1282296651 - - Stomatin-1, putative [Ricinus communis]
10 Hb_001353_010 0.1293551992 - - PREDICTED: cytochrome c oxidase assembly protein COX11, mitochondrial [Jatropha curcas]
11 Hb_000060_050 0.1328773257 - - PREDICTED: uncharacterized protein LOC105649718 [Jatropha curcas]
12 Hb_180343_010 0.1330729158 - - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, putative [Ricinus communis]
13 Hb_025098_010 0.1330849482 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X2 [Jatropha curcas]
14 Hb_000563_200 0.1337101902 - - hypothetical protein JCGZ_18930 [Jatropha curcas]
15 Hb_002184_090 0.1349126782 - - DNA binding protein, putative [Ricinus communis]
16 Hb_004195_080 0.1369269853 - - PREDICTED: cyclin-P3-1 isoform X2 [Jatropha curcas]
17 Hb_000983_030 0.1377142358 - - PREDICTED: 26S protease regulatory subunit S10B homolog B [Jatropha curcas]
18 Hb_083380_020 0.1379979941 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
19 Hb_000019_180 0.1387997129 transcription factor TF Family: SET Histone-lysine N-methyltransferase family protein [Populus trichocarpa]
20 Hb_000127_140 0.1389974805 - - transporter-related family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_001865_090 Hb_001865_090 Hb_000029_070 Hb_000029_070 Hb_001865_090--Hb_000029_070 Hb_166574_010 Hb_166574_010 Hb_001865_090--Hb_166574_010 Hb_008147_090 Hb_008147_090 Hb_001865_090--Hb_008147_090 Hb_001754_080 Hb_001754_080 Hb_001865_090--Hb_001754_080 Hb_000120_770 Hb_000120_770 Hb_001865_090--Hb_000120_770 Hb_001489_110 Hb_001489_110 Hb_001865_090--Hb_001489_110 Hb_000029_070--Hb_008147_090 Hb_000768_210 Hb_000768_210 Hb_000029_070--Hb_000768_210 Hb_002518_210 Hb_002518_210 Hb_000029_070--Hb_002518_210 Hb_045003_010 Hb_045003_010 Hb_000029_070--Hb_045003_010 Hb_000127_140 Hb_000127_140 Hb_000029_070--Hb_000127_140 Hb_166574_010--Hb_000127_140 Hb_166574_010--Hb_008147_090 Hb_007894_010 Hb_007894_010 Hb_166574_010--Hb_007894_010 Hb_010368_050 Hb_010368_050 Hb_166574_010--Hb_010368_050 Hb_000181_350 Hb_000181_350 Hb_166574_010--Hb_000181_350 Hb_180343_010 Hb_180343_010 Hb_008147_090--Hb_180343_010 Hb_008147_090--Hb_000127_140 Hb_002392_010 Hb_002392_010 Hb_008147_090--Hb_002392_010 Hb_001195_060 Hb_001195_060 Hb_008147_090--Hb_001195_060 Hb_002184_090 Hb_002184_090 Hb_008147_090--Hb_002184_090 Hb_000060_050 Hb_000060_050 Hb_001754_080--Hb_000060_050 Hb_004158_020 Hb_004158_020 Hb_001754_080--Hb_004158_020 Hb_003305_040 Hb_003305_040 Hb_001754_080--Hb_003305_040 Hb_001754_080--Hb_001489_110 Hb_002110_100 Hb_002110_100 Hb_001754_080--Hb_002110_100 Hb_002677_020 Hb_002677_020 Hb_001754_080--Hb_002677_020 Hb_001242_080 Hb_001242_080 Hb_000120_770--Hb_001242_080 Hb_001575_060 Hb_001575_060 Hb_000120_770--Hb_001575_060 Hb_002876_020 Hb_002876_020 Hb_000120_770--Hb_002876_020 Hb_003106_100 Hb_003106_100 Hb_000120_770--Hb_003106_100 Hb_004257_010 Hb_004257_010 Hb_000120_770--Hb_004257_010 Hb_001489_110--Hb_000060_050 Hb_001353_010 Hb_001353_010 Hb_001489_110--Hb_001353_010 Hb_002995_050 Hb_002995_050 Hb_001489_110--Hb_002995_050 Hb_185255_010 Hb_185255_010 Hb_001489_110--Hb_185255_010 Hb_001269_190 Hb_001269_190 Hb_001489_110--Hb_001269_190 Hb_025098_010 Hb_025098_010 Hb_001489_110--Hb_025098_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.04359 2.14183 8.61834 16.8856 2.77122 8.66392
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.29014 15.097 10.1683 6.1027 8.94799

CAGE analysis