Hb_001866_090

Information

Type -
Description -
Location Contig1866: 102257-105843
Sequence    

Annotation

kegg
ID tcc:TCM_011393
description hypothetical protein
nr
ID CAN65005.1
description hypothetical protein VITISV_023491 [Vitis vinifera]
swissprot
ID P92520
description Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana GN=AtMg00820 PE=4 SV=1
trembl
ID A5AX70
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_023491 PE=4 SV=1
Gene Ontology
ID GO:0003676
description hypothetical protein VITISV_023491

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18435: 82045-114159
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001866_090 0.0 - - hypothetical protein VITISV_023491 [Vitis vinifera]
2 Hb_000237_160 0.1354223381 - - BEL1-like homeodomain protein 1 [Morus notabilis]
3 Hb_003517_090 0.1583999595 - - PREDICTED: zinc finger CCCH domain-containing protein 18-like isoform X2 [Jatropha curcas]
4 Hb_011609_210 0.1680752733 - - Uncharacterized protein TCM_011393 [Theobroma cacao]
5 Hb_002983_090 0.1748737636 - - Altered inheritance of mitochondria protein 32 [Glycine soja]
6 Hb_010565_030 0.1758444899 - - hypothetical protein VITISV_006810 [Vitis vinifera]
7 Hb_005305_030 0.1763833254 - - hypothetical protein JCGZ_25922 [Jatropha curcas]
8 Hb_011472_050 0.1804674315 - - -
9 Hb_003799_060 0.1811597186 - - hypothetical protein POPTR_0005s22800g [Populus trichocarpa]
10 Hb_000366_030 0.1819769354 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Jatropha curcas]
11 Hb_001514_150 0.1851093273 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
12 Hb_049293_010 0.1882567703 - - kinase, putative [Ricinus communis]
13 Hb_000753_150 0.1891045825 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.4 [Jatropha curcas]
14 Hb_000027_230 0.1896253863 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
15 Hb_000594_130 0.1903504583 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_002110_110 0.1904039545 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
17 Hb_067472_010 0.1912848462 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
18 Hb_000538_300 0.1922569636 - - PREDICTED: WAT1-related protein At3g02690, chloroplastic [Jatropha curcas]
19 Hb_000767_010 0.1937314576 - - PREDICTED: geraniol 8-hydroxylase-like isoform X2 [Solanum lycopersicum]
20 Hb_002395_020 0.1940344272 - - Protein CREG1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001866_090 Hb_001866_090 Hb_000237_160 Hb_000237_160 Hb_001866_090--Hb_000237_160 Hb_003517_090 Hb_003517_090 Hb_001866_090--Hb_003517_090 Hb_011609_210 Hb_011609_210 Hb_001866_090--Hb_011609_210 Hb_002983_090 Hb_002983_090 Hb_001866_090--Hb_002983_090 Hb_010565_030 Hb_010565_030 Hb_001866_090--Hb_010565_030 Hb_005305_030 Hb_005305_030 Hb_001866_090--Hb_005305_030 Hb_000753_150 Hb_000753_150 Hb_000237_160--Hb_000753_150 Hb_000237_160--Hb_003517_090 Hb_000237_160--Hb_002983_090 Hb_003177_090 Hb_003177_090 Hb_000237_160--Hb_003177_090 Hb_000237_170 Hb_000237_170 Hb_000237_160--Hb_000237_170 Hb_000959_010 Hb_000959_010 Hb_000237_160--Hb_000959_010 Hb_000363_050 Hb_000363_050 Hb_003517_090--Hb_000363_050 Hb_083242_020 Hb_083242_020 Hb_003517_090--Hb_083242_020 Hb_001514_150 Hb_001514_150 Hb_003517_090--Hb_001514_150 Hb_011472_050 Hb_011472_050 Hb_003517_090--Hb_011472_050 Hb_004605_020 Hb_004605_020 Hb_003517_090--Hb_004605_020 Hb_011609_210--Hb_010565_030 Hb_012404_080 Hb_012404_080 Hb_011609_210--Hb_012404_080 Hb_005542_010 Hb_005542_010 Hb_011609_210--Hb_005542_010 Hb_000977_150 Hb_000977_150 Hb_011609_210--Hb_000977_150 Hb_000454_160 Hb_000454_160 Hb_011609_210--Hb_000454_160 Hb_018272_050 Hb_018272_050 Hb_011609_210--Hb_018272_050 Hb_001468_040 Hb_001468_040 Hb_002983_090--Hb_001468_040 Hb_008461_070 Hb_008461_070 Hb_002983_090--Hb_008461_070 Hb_158534_010 Hb_158534_010 Hb_002983_090--Hb_158534_010 Hb_046117_030 Hb_046117_030 Hb_002983_090--Hb_046117_030 Hb_000033_010 Hb_000033_010 Hb_002983_090--Hb_000033_010 Hb_010565_030--Hb_005542_010 Hb_010565_030--Hb_011472_050 Hb_000173_110 Hb_000173_110 Hb_010565_030--Hb_000173_110 Hb_000123_340 Hb_000123_340 Hb_010565_030--Hb_000123_340 Hb_002110_110 Hb_002110_110 Hb_010565_030--Hb_002110_110 Hb_092029_010 Hb_092029_010 Hb_005305_030--Hb_092029_010 Hb_005305_030--Hb_000959_010 Hb_000465_450 Hb_000465_450 Hb_005305_030--Hb_000465_450 Hb_000767_010 Hb_000767_010 Hb_005305_030--Hb_000767_010 Hb_000522_010 Hb_000522_010 Hb_005305_030--Hb_000522_010 Hb_007237_010 Hb_007237_010 Hb_005305_030--Hb_007237_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.124929 0.0395164 0.0809803 0.00729763 0.00682043
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0165408 0.0130159 0 0.0671639 0.249334

CAGE analysis