Hb_001871_030

Information

Type -
Description -
Location Contig1871: 42852-43571
Sequence    

Annotation

kegg
ID rcu:RCOM_1510340
description hypothetical protein
nr
ID XP_002511376.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RB01
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1510340 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18481: 41787-42078
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001871_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000832_010 0.1378100339 - - hypothetical protein VITISV_005044 [Vitis vinifera]
3 Hb_003927_020 0.1531479 - - PREDICTED: uncharacterized protein LOC105782546 [Gossypium raimondii]
4 Hb_000167_070 0.1785503776 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
5 Hb_006992_030 0.179814331 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
6 Hb_005765_020 0.1860871295 - - -
7 Hb_007885_110 0.1875585109 - - PREDICTED: uncharacterized protein LOC104109376 [Nicotiana tomentosiformis]
8 Hb_001880_020 0.1924990859 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
9 Hb_002729_020 0.1926224173 - - PREDICTED: uncharacterized protein LOC104804969, partial [Tarenaya hassleriana]
10 Hb_072173_010 0.1945718527 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 34 [Jatropha curcas]
11 Hb_006274_020 0.194952313 - - structural constituent of cell wall, putative [Ricinus communis]
12 Hb_020400_010 0.1969846303 - - PREDICTED: uncharacterized protein LOC105644073 [Jatropha curcas]
13 Hb_000346_050 0.1974736154 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
14 Hb_001355_050 0.1979043664 - - -
15 Hb_008755_020 0.1979510796 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_004520_010 0.1990638755 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
17 Hb_008055_030 0.2011740058 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
18 Hb_005595_030 0.2016062037 - - hypothetical protein EUGRSUZ_A00624 [Eucalyptus grandis]
19 Hb_014967_010 0.2017569799 - - -
20 Hb_000803_230 0.2019502002 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_001871_030 Hb_001871_030 Hb_000832_010 Hb_000832_010 Hb_001871_030--Hb_000832_010 Hb_003927_020 Hb_003927_020 Hb_001871_030--Hb_003927_020 Hb_000167_070 Hb_000167_070 Hb_001871_030--Hb_000167_070 Hb_006992_030 Hb_006992_030 Hb_001871_030--Hb_006992_030 Hb_005765_020 Hb_005765_020 Hb_001871_030--Hb_005765_020 Hb_007885_110 Hb_007885_110 Hb_001871_030--Hb_007885_110 Hb_006274_020 Hb_006274_020 Hb_000832_010--Hb_006274_020 Hb_002729_020 Hb_002729_020 Hb_000832_010--Hb_002729_020 Hb_000832_010--Hb_005765_020 Hb_019641_020 Hb_019641_020 Hb_000832_010--Hb_019641_020 Hb_072173_010 Hb_072173_010 Hb_000832_010--Hb_072173_010 Hb_003927_020--Hb_000167_070 Hb_001880_020 Hb_001880_020 Hb_003927_020--Hb_001880_020 Hb_001355_050 Hb_001355_050 Hb_003927_020--Hb_001355_050 Hb_005595_030 Hb_005595_030 Hb_003927_020--Hb_005595_030 Hb_003927_020--Hb_006992_030 Hb_000346_050 Hb_000346_050 Hb_003927_020--Hb_000346_050 Hb_000167_070--Hb_001880_020 Hb_159404_010 Hb_159404_010 Hb_000167_070--Hb_159404_010 Hb_001856_280 Hb_001856_280 Hb_000167_070--Hb_001856_280 Hb_014967_010 Hb_014967_010 Hb_000167_070--Hb_014967_010 Hb_000167_070--Hb_005595_030 Hb_006992_030--Hb_001355_050 Hb_006992_030--Hb_005765_020 Hb_006992_030--Hb_005595_030 Hb_023547_020 Hb_023547_020 Hb_006992_030--Hb_023547_020 Hb_006992_030--Hb_001880_020 Hb_058095_030 Hb_058095_030 Hb_005765_020--Hb_058095_030 Hb_000028_270 Hb_000028_270 Hb_005765_020--Hb_000028_270 Hb_002585_060 Hb_002585_060 Hb_005765_020--Hb_002585_060 Hb_005765_020--Hb_003927_020 Hb_032299_070 Hb_032299_070 Hb_005765_020--Hb_032299_070 Hb_008055_030 Hb_008055_030 Hb_007885_110--Hb_008055_030 Hb_005920_030 Hb_005920_030 Hb_007885_110--Hb_005920_030 Hb_004520_010 Hb_004520_010 Hb_007885_110--Hb_004520_010 Hb_007885_110--Hb_001856_280 Hb_035651_010 Hb_035651_010 Hb_007885_110--Hb_035651_010 Hb_019654_170 Hb_019654_170 Hb_007885_110--Hb_019654_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0387237 0.374277 0.0936059 0 0.0363573 0.0344166
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.719137 1.51831

CAGE analysis