Hb_001871_040

Information

Type transcription factor
Description TF Family: FAR1
Location Contig1871: 53696-61362
Sequence    

Annotation

kegg
ID pop:POPTR_0003s10970g
description hypothetical protein
nr
ID XP_012092633.1
description PREDICTED: protein FAR1-RELATED SEQUENCE 1-like isoform X2 [Jatropha curcas]
swissprot
ID Q9SWG3
description Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana GN=FAR1 PE=1 SV=1
trembl
ID A0A067J9C7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06470 PE=4 SV=1
Gene Ontology
ID GO:0008270
description protein far-red impaired response 1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18479: 39517-55381 , PASA_asmbl_18480: 40866-54314 , PASA_asmbl_18483: 55644-61220
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001871_040 0.0 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 1-like isoform X2 [Jatropha curcas]
2 Hb_123777_030 0.0540937562 transcription factor TF Family: SNF2 PREDICTED: DNA helicase INO80 isoform X2 [Jatropha curcas]
3 Hb_004055_040 0.0614716695 - - Phospholipid-transporting ATPase, putative [Ricinus communis]
4 Hb_004096_020 0.0707085556 - - PREDICTED: KH domain-containing protein At4g18375-like, partial [Fragaria vesca subsp. vesca]
5 Hb_063047_010 0.0744869813 - - peroxisomal targeting signal type 1 (pts1) receptor, putative [Ricinus communis]
6 Hb_003406_040 0.074905322 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
7 Hb_002928_060 0.0772876902 - - PREDICTED: pre-rRNA-processing protein TSR1 homolog [Jatropha curcas]
8 Hb_012016_020 0.0774105244 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105636265 [Jatropha curcas]
9 Hb_041091_010 0.0775332434 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial [Jatropha curcas]
10 Hb_001366_040 0.0785195918 transcription factor TF Family: SNF2 PREDICTED: endoribonuclease Dicer homolog 1 [Jatropha curcas]
11 Hb_004452_100 0.0796389131 - - PREDICTED: uncharacterized protein LOC105639563 [Jatropha curcas]
12 Hb_001609_010 0.0799054103 desease resistance Gene Name: NB-ARC PREDICTED: putative inactive disease susceptibility protein LOV1 [Jatropha curcas]
13 Hb_000046_450 0.0821349951 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
14 Hb_001771_130 0.082734537 - - PREDICTED: pentatricopeptide repeat-containing protein At2g27610 [Jatropha curcas]
15 Hb_000076_080 0.0830762824 - - PREDICTED: protein MOS2 [Jatropha curcas]
16 Hb_000136_150 0.0853835785 - - hypothetical protein VITISV_038366 [Vitis vinifera]
17 Hb_001504_160 0.086797585 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
18 Hb_007407_040 0.0868817032 - - ankyrin repeat-containing protein, putative [Ricinus communis]
19 Hb_000915_050 0.0884824239 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005399_010 0.0891031082 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]

Gene co-expression network

sample Hb_001871_040 Hb_001871_040 Hb_123777_030 Hb_123777_030 Hb_001871_040--Hb_123777_030 Hb_004055_040 Hb_004055_040 Hb_001871_040--Hb_004055_040 Hb_004096_020 Hb_004096_020 Hb_001871_040--Hb_004096_020 Hb_063047_010 Hb_063047_010 Hb_001871_040--Hb_063047_010 Hb_003406_040 Hb_003406_040 Hb_001871_040--Hb_003406_040 Hb_002928_060 Hb_002928_060 Hb_001871_040--Hb_002928_060 Hb_123777_030--Hb_003406_040 Hb_000005_380 Hb_000005_380 Hb_123777_030--Hb_000005_380 Hb_007586_030 Hb_007586_030 Hb_123777_030--Hb_007586_030 Hb_000977_180 Hb_000977_180 Hb_123777_030--Hb_000977_180 Hb_123777_030--Hb_004055_040 Hb_004055_040--Hb_002928_060 Hb_005730_030 Hb_005730_030 Hb_004055_040--Hb_005730_030 Hb_001366_040 Hb_001366_040 Hb_004055_040--Hb_001366_040 Hb_000244_250 Hb_000244_250 Hb_004055_040--Hb_000244_250 Hb_000915_050 Hb_000915_050 Hb_004055_040--Hb_000915_050 Hb_046615_020 Hb_046615_020 Hb_004096_020--Hb_046615_020 Hb_004096_020--Hb_003406_040 Hb_004096_020--Hb_123777_030 Hb_000195_020 Hb_000195_020 Hb_004096_020--Hb_000195_020 Hb_000357_080 Hb_000357_080 Hb_004096_020--Hb_000357_080 Hb_001609_010 Hb_001609_010 Hb_063047_010--Hb_001609_010 Hb_001040_160 Hb_001040_160 Hb_063047_010--Hb_001040_160 Hb_000316_030 Hb_000316_030 Hb_063047_010--Hb_000316_030 Hb_110364_010 Hb_110364_010 Hb_063047_010--Hb_110364_010 Hb_004881_050 Hb_004881_050 Hb_063047_010--Hb_004881_050 Hb_003406_040--Hb_000005_380 Hb_002150_030 Hb_002150_030 Hb_003406_040--Hb_002150_030 Hb_007407_040 Hb_007407_040 Hb_003406_040--Hb_007407_040 Hb_002928_060--Hb_005730_030 Hb_002874_070 Hb_002874_070 Hb_002928_060--Hb_002874_070 Hb_000230_330 Hb_000230_330 Hb_002928_060--Hb_000230_330 Hb_003362_040 Hb_003362_040 Hb_002928_060--Hb_003362_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.639 16.7519 5.4212 6.10803 32.5717 51.7783
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.693 9.82998 23.2001 12.8258 10.4558

CAGE analysis