Hb_001876_040

Information

Type -
Description -
Location Contig1876: 25970-30715
Sequence    

Annotation

kegg
ID rcu:RCOM_0593150
description ATP binding protein, putative
nr
ID XP_012087621.1
description PREDICTED: mucin-5B [Jatropha curcas]
swissprot
ID Q9Y493
description Zonadhesin OS=Homo sapiens GN=ZAN PE=2 SV=4
trembl
ID B9SLM8
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0593150 PE=4 SV=1
Gene Ontology
ID GO:0009628
description atp binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18497: 26124-30714
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001876_040 0.0 - - PREDICTED: mucin-5B [Jatropha curcas]
2 Hb_001157_230 0.0354596037 - - Protein AFR, putative [Ricinus communis]
3 Hb_022250_010 0.0587052437 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10L [Jatropha curcas]
4 Hb_000212_120 0.0590767386 - - hypothetical protein JCGZ_18070 [Jatropha curcas]
5 Hb_032202_220 0.0647016916 - - ring finger protein, putative [Ricinus communis]
6 Hb_024184_010 0.0704474746 - - PREDICTED: clustered mitochondria protein-like isoform X1 [Citrus sinensis]
7 Hb_002027_080 0.0756336265 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105650047 [Jatropha curcas]
8 Hb_001301_270 0.076989715 - - PREDICTED: heat shock 70 kDa protein 16 [Jatropha curcas]
9 Hb_000049_020 0.0782896384 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
10 Hb_002883_030 0.0798172588 - - PREDICTED: uncharacterized protein LOC105638222 [Jatropha curcas]
11 Hb_000300_270 0.0805480879 - - cationic amino acid transporter, putative [Ricinus communis]
12 Hb_002774_190 0.0805934366 - - Endoplasmic reticulum-Golgi intermediate compartment protein, putative [Ricinus communis]
13 Hb_002289_060 0.0817085527 - - conserved hypothetical protein [Ricinus communis]
14 Hb_008511_020 0.083981426 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
15 Hb_001029_040 0.0840755586 - - PREDICTED: uncharacterized protein LOC105641058 [Jatropha curcas]
16 Hb_002897_090 0.085108023 - - conserved hypothetical protein [Ricinus communis]
17 Hb_011310_110 0.0864296368 - - PREDICTED: probable sugar phosphate/phosphate translocator At5g25400 isoform X1 [Jatropha curcas]
18 Hb_008014_040 0.0872656932 - - PREDICTED: uncharacterized protein LOC105649721 [Jatropha curcas]
19 Hb_004531_100 0.0883297217 - - PREDICTED: zinc phosphodiesterase ELAC protein 2 isoform X1 [Jatropha curcas]
20 Hb_000244_180 0.0899463628 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001876_040 Hb_001876_040 Hb_001157_230 Hb_001157_230 Hb_001876_040--Hb_001157_230 Hb_022250_010 Hb_022250_010 Hb_001876_040--Hb_022250_010 Hb_000212_120 Hb_000212_120 Hb_001876_040--Hb_000212_120 Hb_032202_220 Hb_032202_220 Hb_001876_040--Hb_032202_220 Hb_024184_010 Hb_024184_010 Hb_001876_040--Hb_024184_010 Hb_002027_080 Hb_002027_080 Hb_001876_040--Hb_002027_080 Hb_001157_230--Hb_000212_120 Hb_001157_230--Hb_022250_010 Hb_001157_230--Hb_032202_220 Hb_001157_230--Hb_024184_010 Hb_001029_040 Hb_001029_040 Hb_001157_230--Hb_001029_040 Hb_183086_030 Hb_183086_030 Hb_022250_010--Hb_183086_030 Hb_001541_150 Hb_001541_150 Hb_022250_010--Hb_001541_150 Hb_022250_010--Hb_001029_040 Hb_000270_190 Hb_000270_190 Hb_022250_010--Hb_000270_190 Hb_002774_190 Hb_002774_190 Hb_000212_120--Hb_002774_190 Hb_000212_120--Hb_032202_220 Hb_000061_180 Hb_000061_180 Hb_000212_120--Hb_000061_180 Hb_002883_030 Hb_002883_030 Hb_000212_120--Hb_002883_030 Hb_001301_270 Hb_001301_270 Hb_032202_220--Hb_001301_270 Hb_000078_140 Hb_000078_140 Hb_032202_220--Hb_000078_140 Hb_032202_220--Hb_002774_190 Hb_032202_220--Hb_000061_180 Hb_003125_220 Hb_003125_220 Hb_024184_010--Hb_003125_220 Hb_024184_010--Hb_000212_120 Hb_024184_010--Hb_002883_030 Hb_007545_010 Hb_007545_010 Hb_024184_010--Hb_007545_010 Hb_002897_090 Hb_002897_090 Hb_002027_080--Hb_002897_090 Hb_001518_080 Hb_001518_080 Hb_002027_080--Hb_001518_080 Hb_003581_200 Hb_003581_200 Hb_002027_080--Hb_003581_200 Hb_000441_090 Hb_000441_090 Hb_002027_080--Hb_000441_090 Hb_000773_040 Hb_000773_040 Hb_002027_080--Hb_000773_040 Hb_000635_090 Hb_000635_090 Hb_002027_080--Hb_000635_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.02391 5.88564 8.65859 13.0652 5.61834 6.57288
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.46211 4.38316 5.25085 5.17886 13.8257

CAGE analysis