Hb_001878_060

Information

Type transcription factor
Description TF Family: G2-like
Location Contig1878: 81563-87807
Sequence    

Annotation

kegg
ID pop:POPTR_0007s15110g
description POPTRDRAFT_1084014; hypothetical protein
nr
ID XP_002310903.2
description hypothetical protein POPTR_0007s15110g [Populus trichocarpa]
swissprot
ID Q8GUN5
description Protein PHR1-LIKE 1 OS=Arabidopsis thaliana GN=PHL1 PE=1 SV=1
trembl
ID B9HG20
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s15110g PE=4 SV=2
Gene Ontology
ID GO:0003677
description protein phr1-like 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18510: 81557-85804 , PASA_asmbl_18511: 87560-87851
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001878_060 0.0 transcription factor TF Family: G2-like hypothetical protein POPTR_0007s15110g [Populus trichocarpa]
2 Hb_016461_020 0.0872623789 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000579_130 0.0935086217 - - ubiquitin-protein ligase, putative [Ricinus communis]
4 Hb_002739_120 0.0943908324 - - PREDICTED: zinc finger protein ZPR1-like [Jatropha curcas]
5 Hb_008165_020 0.0951391002 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
6 Hb_001675_320 0.0954093289 - - PREDICTED: uncharacterized protein LOC105635025 [Jatropha curcas]
7 Hb_001085_080 0.0988818914 - - eukaryotic translation elongation factor 1-alpha [Hevea brasiliensis]
8 Hb_001558_040 0.1007453937 - - PREDICTED: GPI ethanolamine phosphate transferase 2 [Jatropha curcas]
9 Hb_000470_110 0.1042012019 - - PREDICTED: probable LIM domain-containing serine/threonine-protein kinase DDB_G0287001 [Jatropha curcas]
10 Hb_003964_110 0.1049674239 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Jatropha curcas]
11 Hb_001414_010 0.1060842886 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
12 Hb_021977_010 0.1079362459 - - PREDICTED: leukotriene A-4 hydrolase homolog [Jatropha curcas]
13 Hb_044486_020 0.1096305753 - - CASTOR protein [Glycine max]
14 Hb_003777_030 0.1100903519 - - Exocyst complex component, putative [Ricinus communis]
15 Hb_000331_100 0.1104273161 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
16 Hb_000197_180 0.1120385695 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase 1 [Jatropha curcas]
17 Hb_001103_090 0.1121250683 - - PREDICTED: patellin-3 [Populus euphratica]
18 Hb_005305_100 0.1125685456 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
19 Hb_009372_020 0.1127390641 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
20 Hb_060094_010 0.1128742159 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001878_060 Hb_001878_060 Hb_016461_020 Hb_016461_020 Hb_001878_060--Hb_016461_020 Hb_000579_130 Hb_000579_130 Hb_001878_060--Hb_000579_130 Hb_002739_120 Hb_002739_120 Hb_001878_060--Hb_002739_120 Hb_008165_020 Hb_008165_020 Hb_001878_060--Hb_008165_020 Hb_001675_320 Hb_001675_320 Hb_001878_060--Hb_001675_320 Hb_001085_080 Hb_001085_080 Hb_001878_060--Hb_001085_080 Hb_000297_030 Hb_000297_030 Hb_016461_020--Hb_000297_030 Hb_000890_030 Hb_000890_030 Hb_016461_020--Hb_000890_030 Hb_005305_100 Hb_005305_100 Hb_016461_020--Hb_005305_100 Hb_000046_600 Hb_000046_600 Hb_016461_020--Hb_000046_600 Hb_006468_010 Hb_006468_010 Hb_016461_020--Hb_006468_010 Hb_016461_020--Hb_000579_130 Hb_000579_130--Hb_001085_080 Hb_010042_030 Hb_010042_030 Hb_000579_130--Hb_010042_030 Hb_001558_040 Hb_001558_040 Hb_000579_130--Hb_001558_040 Hb_016172_030 Hb_016172_030 Hb_000579_130--Hb_016172_030 Hb_007137_050 Hb_007137_050 Hb_000579_130--Hb_007137_050 Hb_002007_260 Hb_002007_260 Hb_000579_130--Hb_002007_260 Hb_001250_050 Hb_001250_050 Hb_002739_120--Hb_001250_050 Hb_002739_120--Hb_001085_080 Hb_003777_030 Hb_003777_030 Hb_002739_120--Hb_003777_030 Hb_000418_020 Hb_000418_020 Hb_002739_120--Hb_000418_020 Hb_000197_180 Hb_000197_180 Hb_002739_120--Hb_000197_180 Hb_001009_150 Hb_001009_150 Hb_002739_120--Hb_001009_150 Hb_000331_100 Hb_000331_100 Hb_008165_020--Hb_000331_100 Hb_009476_120 Hb_009476_120 Hb_008165_020--Hb_009476_120 Hb_001414_010 Hb_001414_010 Hb_008165_020--Hb_001414_010 Hb_001507_050 Hb_001507_050 Hb_008165_020--Hb_001507_050 Hb_000428_030 Hb_000428_030 Hb_008165_020--Hb_000428_030 Hb_008165_020--Hb_005305_100 Hb_001103_090 Hb_001103_090 Hb_001675_320--Hb_001103_090 Hb_000205_280 Hb_000205_280 Hb_001675_320--Hb_000205_280 Hb_003849_220 Hb_003849_220 Hb_001675_320--Hb_003849_220 Hb_028077_020 Hb_028077_020 Hb_001675_320--Hb_028077_020 Hb_003599_030 Hb_003599_030 Hb_001675_320--Hb_003599_030 Hb_001097_040 Hb_001097_040 Hb_001085_080--Hb_001097_040 Hb_001085_080--Hb_001558_040 Hb_158845_060 Hb_158845_060 Hb_001085_080--Hb_158845_060 Hb_001811_170 Hb_001811_170 Hb_001085_080--Hb_001811_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.37426 9.86701 7.56568 11.3384 2.9745 4.76134
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.49138 2.9972 1.29647 6.34111 6.88996

CAGE analysis