Hb_001882_020

Information

Type -
Description -
Location Contig1882: 21382-29699
Sequence    

Annotation

kegg
ID pop:POPTR_0017s05480g
description hypothetical protein
nr
ID XP_012065214.1
description PREDICTED: uncharacterized protein LOC105628417 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LH35
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20900 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18576: 21466-29443 , PASA_asmbl_18577: 24082-24297 , PASA_asmbl_18578: 26088-26252
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001882_020 0.0 - - PREDICTED: uncharacterized protein LOC105628417 [Jatropha curcas]
2 Hb_003746_010 0.089598715 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003682_070 0.0909194917 - - PREDICTED: uncharacterized protein LOC105633817 isoform X1 [Jatropha curcas]
4 Hb_027445_030 0.0926467002 - - F-box/LRR-repeat protein, putative [Ricinus communis]
5 Hb_005192_010 0.0984819548 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
6 Hb_000922_060 0.100589039 - - kinesin light chain, putative [Ricinus communis]
7 Hb_001029_040 0.103457488 - - PREDICTED: uncharacterized protein LOC105641058 [Jatropha curcas]
8 Hb_009674_050 0.1078558459 - - Endosomal P24A protein precursor, putative [Ricinus communis]
9 Hb_001801_020 0.1110641362 - - PREDICTED: xylosyltransferase 1 [Jatropha curcas]
10 Hb_000920_310 0.1117404214 - - Ran GTPase binding protein, putative [Ricinus communis]
11 Hb_000000_310 0.1128167667 - - metalloendopeptidase, putative [Ricinus communis]
12 Hb_000189_480 0.1134371826 - - PREDICTED: uncharacterized protein LOC105111904 isoform X2 [Populus euphratica]
13 Hb_004735_020 0.1147344011 - - PREDICTED: uncharacterized protein LOC105639315 [Jatropha curcas]
14 Hb_001157_230 0.1216237818 - - Protein AFR, putative [Ricinus communis]
15 Hb_001946_180 0.1218175718 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000172_350 0.1220342055 - - PREDICTED: uncharacterized protein LOC105650963 [Jatropha curcas]
17 Hb_001627_040 0.122086934 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 6 isoform X1 [Jatropha curcas]
18 Hb_002289_060 0.1226125567 - - conserved hypothetical protein [Ricinus communis]
19 Hb_183086_030 0.1238578162 - - GTPase-activating protein GYP7 [Gossypium arboreum]
20 Hb_003994_300 0.124150426 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001882_020 Hb_001882_020 Hb_003746_010 Hb_003746_010 Hb_001882_020--Hb_003746_010 Hb_003682_070 Hb_003682_070 Hb_001882_020--Hb_003682_070 Hb_027445_030 Hb_027445_030 Hb_001882_020--Hb_027445_030 Hb_005192_010 Hb_005192_010 Hb_001882_020--Hb_005192_010 Hb_000922_060 Hb_000922_060 Hb_001882_020--Hb_000922_060 Hb_001029_040 Hb_001029_040 Hb_001882_020--Hb_001029_040 Hb_003746_010--Hb_001029_040 Hb_009674_050 Hb_009674_050 Hb_003746_010--Hb_009674_050 Hb_003746_010--Hb_005192_010 Hb_003746_010--Hb_003682_070 Hb_009252_030 Hb_009252_030 Hb_003746_010--Hb_009252_030 Hb_000000_310 Hb_000000_310 Hb_003682_070--Hb_000000_310 Hb_003682_070--Hb_000922_060 Hb_000300_510 Hb_000300_510 Hb_003682_070--Hb_000300_510 Hb_000107_250 Hb_000107_250 Hb_003682_070--Hb_000107_250 Hb_000120_860 Hb_000120_860 Hb_003682_070--Hb_000120_860 Hb_004735_020 Hb_004735_020 Hb_003682_070--Hb_004735_020 Hb_000665_190 Hb_000665_190 Hb_027445_030--Hb_000665_190 Hb_003994_300 Hb_003994_300 Hb_027445_030--Hb_003994_300 Hb_027445_030--Hb_000922_060 Hb_005977_100 Hb_005977_100 Hb_027445_030--Hb_005977_100 Hb_008406_180 Hb_008406_180 Hb_027445_030--Hb_008406_180 Hb_003975_010 Hb_003975_010 Hb_005192_010--Hb_003975_010 Hb_005192_010--Hb_001029_040 Hb_005192_010--Hb_000300_510 Hb_005192_010--Hb_000922_060 Hb_001754_020 Hb_001754_020 Hb_005192_010--Hb_001754_020 Hb_000922_060--Hb_000000_310 Hb_183086_030 Hb_183086_030 Hb_000922_060--Hb_183086_030 Hb_000922_060--Hb_000300_510 Hb_022250_010 Hb_022250_010 Hb_000922_060--Hb_022250_010 Hb_001627_040 Hb_001627_040 Hb_001029_040--Hb_001627_040 Hb_007545_010 Hb_007545_010 Hb_001029_040--Hb_007545_010 Hb_001157_230 Hb_001157_230 Hb_001029_040--Hb_001157_230 Hb_138585_080 Hb_138585_080 Hb_001029_040--Hb_138585_080 Hb_001029_040--Hb_022250_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.86542 4.33515 3.7339 12.0339 2.06647 4.08411
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.84978 1.46806 3.00671 2.77401 11.7372

CAGE analysis