Hb_001882_050

Information

Type -
Description -
Location Contig1882: 69852-79347
Sequence    

Annotation

kegg
ID rcu:RCOM_0454370
description hydroxysteroid dehydrogenase, putative (EC:1.1.1.170)
nr
ID XP_002529475.1
description hydroxysteroid dehydrogenase, putative [Ricinus communis]
swissprot
ID A9X4U2
description 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 3 OS=Arabidopsis thaliana GN=3BETAHSD/D3 PE=2 SV=2
trembl
ID B9SU06
description Hydroxysteroid dehydrogenase, putative OS=Ricinus communis GN=RCOM_0454370 PE=3 SV=1
Gene Ontology
ID GO:0005886
description 3beta-hydroxysteroid-dehydrogenase decarboxylase isoform 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18585: 69981-71733 , PASA_asmbl_18586: 71877-74171 , PASA_asmbl_18587: 74215-78771 , PASA_asmbl_18588: 78973-79199
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001882_050 0.0 - - hydroxysteroid dehydrogenase, putative [Ricinus communis]
2 Hb_002785_050 0.0730657475 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
3 Hb_000260_330 0.074631078 - - PREDICTED: uncharacterized protein LOC103438625 [Malus domestica]
4 Hb_009529_030 0.0770437569 - - PREDICTED: transmembrane protein 120 homolog [Jatropha curcas]
5 Hb_003671_010 0.0787329449 - - PREDICTED: protein transport protein SFT2 isoform X1 [Jatropha curcas]
6 Hb_002273_120 0.0812051739 - - PREDICTED: probable apyrase 6 [Jatropha curcas]
7 Hb_003683_020 0.0827621555 - - serine/threonine protein kinase, putative [Ricinus communis]
8 Hb_002947_030 0.0844343801 - - PREDICTED: uncharacterized protein LOC105633529 [Jatropha curcas]
9 Hb_030736_020 0.0846454801 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001018_130 0.085186633 - - PREDICTED: uncharacterized protein LOC105638260 [Jatropha curcas]
11 Hb_028512_020 0.0854349941 - - PREDICTED: protein S-acyltransferase 11 isoform X2 [Jatropha curcas]
12 Hb_002374_370 0.0855426599 - - protein with unknown function [Ricinus communis]
13 Hb_032050_040 0.0865421571 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
14 Hb_017295_010 0.0899933546 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
15 Hb_007919_100 0.0904557002 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105635137 [Jatropha curcas]
16 Hb_012322_020 0.0918963173 - - -
17 Hb_002073_190 0.0922272348 - - PREDICTED: uncharacterized protein LOC105649812 isoform X1 [Jatropha curcas]
18 Hb_000146_050 0.0924999889 - - PREDICTED: protein unc-50 homolog isoform X2 [Gossypium raimondii]
19 Hb_090051_030 0.093042528 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
20 Hb_000258_070 0.0935899154 - - PREDICTED: uncharacterized protein LOC105649104 [Jatropha curcas]

Gene co-expression network

sample Hb_001882_050 Hb_001882_050 Hb_002785_050 Hb_002785_050 Hb_001882_050--Hb_002785_050 Hb_000260_330 Hb_000260_330 Hb_001882_050--Hb_000260_330 Hb_009529_030 Hb_009529_030 Hb_001882_050--Hb_009529_030 Hb_003671_010 Hb_003671_010 Hb_001882_050--Hb_003671_010 Hb_002273_120 Hb_002273_120 Hb_001882_050--Hb_002273_120 Hb_003683_020 Hb_003683_020 Hb_001882_050--Hb_003683_020 Hb_002785_050--Hb_002273_120 Hb_002785_050--Hb_009529_030 Hb_032050_040 Hb_032050_040 Hb_002785_050--Hb_032050_040 Hb_000830_030 Hb_000830_030 Hb_002785_050--Hb_000830_030 Hb_002785_050--Hb_000260_330 Hb_000025_180 Hb_000025_180 Hb_000260_330--Hb_000025_180 Hb_028512_020 Hb_028512_020 Hb_000260_330--Hb_028512_020 Hb_000345_240 Hb_000345_240 Hb_000260_330--Hb_000345_240 Hb_002811_180 Hb_002811_180 Hb_000260_330--Hb_002811_180 Hb_000260_330--Hb_003683_020 Hb_000923_010 Hb_000923_010 Hb_000260_330--Hb_000923_010 Hb_009529_030--Hb_002273_120 Hb_017295_010 Hb_017295_010 Hb_009529_030--Hb_017295_010 Hb_000362_150 Hb_000362_150 Hb_009529_030--Hb_000362_150 Hb_009529_030--Hb_032050_040 Hb_000345_360 Hb_000345_360 Hb_009529_030--Hb_000345_360 Hb_033286_010 Hb_033286_010 Hb_003671_010--Hb_033286_010 Hb_003671_010--Hb_003683_020 Hb_000696_010 Hb_000696_010 Hb_003671_010--Hb_000696_010 Hb_003671_010--Hb_002785_050 Hb_003671_010--Hb_000260_330 Hb_003010_020 Hb_003010_020 Hb_002273_120--Hb_003010_020 Hb_002273_120--Hb_032050_040 Hb_003375_070 Hb_003375_070 Hb_002273_120--Hb_003375_070 Hb_002273_120--Hb_017295_010 Hb_012498_010 Hb_012498_010 Hb_003683_020--Hb_012498_010 Hb_010142_020 Hb_010142_020 Hb_003683_020--Hb_010142_020 Hb_013399_020 Hb_013399_020 Hb_003683_020--Hb_013399_020 Hb_003528_030 Hb_003528_030 Hb_003683_020--Hb_003528_030 Hb_000159_090 Hb_000159_090 Hb_003683_020--Hb_000159_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.36159 3.17404 3.16061 7.96562 6.91441 5.74536
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.28101 4.19412 3.16796 4.04426 4.75477

CAGE analysis