Hb_001882_070

Information

Type transcription factor
Description TF Family: mTERF
Location Contig1882: 96957-98159
Sequence    

Annotation

kegg
ID vvi:100246295
description uncharacterized LOC100246295
nr
ID XP_012073254.1
description PREDICTED: uncharacterized protein LOC105634911 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KZ73
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06200 PE=4 SV=1
Gene Ontology
ID GO:0003676
description rna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18592: 97015-97598
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001882_070 0.0 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105634911 [Jatropha curcas]
2 Hb_002631_020 0.0845875532 - - PREDICTED: protein FAM32A-like [Jatropha curcas]
3 Hb_006452_040 0.0867152994 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
4 Hb_003018_050 0.0875149564 - - PREDICTED: peptidyl-prolyl cis-trans isomerase Pin1 [Jatropha curcas]
5 Hb_007416_020 0.0903279657 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Cucumis sativus]
6 Hb_000441_190 0.0915840075 - - PREDICTED: GDP-L-galactose phosphorylase 1-like isoform X2 [Vitis vinifera]
7 Hb_000283_110 0.0918453635 - - PREDICTED: probable prefoldin subunit 4 isoform X2 [Jatropha curcas]
8 Hb_003226_210 0.0929149383 - - hypothetical protein PRUPE_ppa013414mg [Prunus persica]
9 Hb_002431_050 0.0930584928 - - PREDICTED: probable protein phosphatase 2C 11 [Jatropha curcas]
10 Hb_000045_250 0.093634633 - - PREDICTED: uncharacterized protein LOC105646572 isoform X1 [Jatropha curcas]
11 Hb_001155_040 0.0936969868 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
12 Hb_001842_040 0.098651907 - - PREDICTED: uncharacterized protein LOC100800807 isoform X2 [Glycine max]
13 Hb_002234_070 0.0989747901 - - PREDICTED: polynucleotide 5'-hydroxyl-kinase nol9 isoform X1 [Jatropha curcas]
14 Hb_000312_090 0.100882036 - - PREDICTED: uncharacterized protein LOC105645369 [Jatropha curcas]
15 Hb_001135_080 0.1008909068 - - PREDICTED: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2-like [Jatropha curcas]
16 Hb_007304_070 0.1037009552 - - hypoxanthine-guanine phosphoribosyltransferase, putative [Ricinus communis]
17 Hb_001687_040 0.1042088489 - - actin-depolymerizing factor [Hevea brasiliensis]
18 Hb_003053_030 0.1042816699 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
19 Hb_004459_040 0.1045158505 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
20 Hb_010672_060 0.1046423246 - - gaba(A) receptor-associated protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001882_070 Hb_001882_070 Hb_002631_020 Hb_002631_020 Hb_001882_070--Hb_002631_020 Hb_006452_040 Hb_006452_040 Hb_001882_070--Hb_006452_040 Hb_003018_050 Hb_003018_050 Hb_001882_070--Hb_003018_050 Hb_007416_020 Hb_007416_020 Hb_001882_070--Hb_007416_020 Hb_000441_190 Hb_000441_190 Hb_001882_070--Hb_000441_190 Hb_000283_110 Hb_000283_110 Hb_001882_070--Hb_000283_110 Hb_002631_020--Hb_003018_050 Hb_004449_200 Hb_004449_200 Hb_002631_020--Hb_004449_200 Hb_002631_020--Hb_006452_040 Hb_000122_020 Hb_000122_020 Hb_002631_020--Hb_000122_020 Hb_004374_140 Hb_004374_140 Hb_002631_020--Hb_004374_140 Hb_001191_090 Hb_001191_090 Hb_002631_020--Hb_001191_090 Hb_006452_040--Hb_003018_050 Hb_001155_040 Hb_001155_040 Hb_006452_040--Hb_001155_040 Hb_007317_160 Hb_007317_160 Hb_006452_040--Hb_007317_160 Hb_001221_310 Hb_001221_310 Hb_006452_040--Hb_001221_310 Hb_005463_140 Hb_005463_140 Hb_006452_040--Hb_005463_140 Hb_004125_110 Hb_004125_110 Hb_003018_050--Hb_004125_110 Hb_001158_150 Hb_001158_150 Hb_003018_050--Hb_001158_150 Hb_130235_010 Hb_130235_010 Hb_003018_050--Hb_130235_010 Hb_003018_050--Hb_000122_020 Hb_002431_050 Hb_002431_050 Hb_007416_020--Hb_002431_050 Hb_010672_060 Hb_010672_060 Hb_007416_020--Hb_010672_060 Hb_001080_080 Hb_001080_080 Hb_007416_020--Hb_001080_080 Hb_000365_080 Hb_000365_080 Hb_007416_020--Hb_000365_080 Hb_003226_210 Hb_003226_210 Hb_007416_020--Hb_003226_210 Hb_029584_060 Hb_029584_060 Hb_007416_020--Hb_029584_060 Hb_001842_040 Hb_001842_040 Hb_000441_190--Hb_001842_040 Hb_003893_050 Hb_003893_050 Hb_000441_190--Hb_003893_050 Hb_000441_190--Hb_000283_110 Hb_001461_010 Hb_001461_010 Hb_000441_190--Hb_001461_010 Hb_003994_040 Hb_003994_040 Hb_000441_190--Hb_003994_040 Hb_000023_340 Hb_000023_340 Hb_000441_190--Hb_000023_340 Hb_000283_110--Hb_003226_210 Hb_000283_110--Hb_003893_050 Hb_000283_110--Hb_002431_050 Hb_001638_260 Hb_001638_260 Hb_000283_110--Hb_001638_260 Hb_000029_200 Hb_000029_200 Hb_000283_110--Hb_000029_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.54185 1.66725 2.00996 6.49374 1.95904 4.80838
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.9618 14.6046 6.86698 2.9442 2.76607

CAGE analysis