Hb_001882_080

Information

Type transcription factor
Description TF Family: mTERF
Location Contig1882: 101076-102267
Sequence    

Annotation

kegg
ID pmum:103324347
description uncharacterized LOC103324347
nr
ID XP_008224617.1
description PREDICTED: uncharacterized protein LOC103324347 [Prunus mume]
swissprot
ID -
description -
trembl
ID W9SJF9
description Uncharacterized protein OS=Morus notabilis GN=L484_020492 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001882_080 0.0 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC103324347 [Prunus mume]
2 Hb_007259_010 0.086231561 - - hypothetical protein CISIN_1g0073972mg, partial [Citrus sinensis]
3 Hb_010690_010 0.0935221721 - - PREDICTED: NADPH-dependent 1-acyldihydroxyacetone phosphate reductase [Jatropha curcas]
4 Hb_000742_290 0.1247664787 - - Reticuline oxidase precursor, putative [Ricinus communis]
5 Hb_004531_130 0.1293954505 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X2 [Jatropha curcas]
6 Hb_011574_020 0.1299693162 - - hypothetical protein JCGZ_21524 [Jatropha curcas]
7 Hb_000139_520 0.1329835311 - - EF-hand calcium-binding domain-containing protein 4A [Theobroma cacao]
8 Hb_020738_010 0.1405226379 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
9 Hb_000085_410 0.1541337118 - - hypothetical protein POPTR_0011s09040g [Populus trichocarpa]
10 Hb_002417_010 0.158355557 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
11 Hb_059275_010 0.1589103937 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9 [Jatropha curcas]
12 Hb_000527_050 0.1596481024 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001638_340 0.1598852788 - - conserved hypothetical protein [Ricinus communis]
14 Hb_050898_030 0.1599100687 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002762_100 0.1636213295 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_000544_190 0.1637977344 - - ARF GTPase activator, putative [Ricinus communis]
17 Hb_006586_040 0.1671588417 - - hypothetical protein POPTR_0011s11750g [Populus trichocarpa]
18 Hb_010381_100 0.1675873539 - - Phospholipase D epsilon [Morus notabilis]
19 Hb_084812_010 0.1683278865 - - PREDICTED: putative RING-H2 finger protein ATL21B [Vitis vinifera]
20 Hb_001110_060 0.1686033427 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001882_080 Hb_001882_080 Hb_007259_010 Hb_007259_010 Hb_001882_080--Hb_007259_010 Hb_010690_010 Hb_010690_010 Hb_001882_080--Hb_010690_010 Hb_000742_290 Hb_000742_290 Hb_001882_080--Hb_000742_290 Hb_004531_130 Hb_004531_130 Hb_001882_080--Hb_004531_130 Hb_011574_020 Hb_011574_020 Hb_001882_080--Hb_011574_020 Hb_000139_520 Hb_000139_520 Hb_001882_080--Hb_000139_520 Hb_007259_010--Hb_010690_010 Hb_007259_010--Hb_011574_020 Hb_007259_010--Hb_004531_130 Hb_001638_340 Hb_001638_340 Hb_007259_010--Hb_001638_340 Hb_007259_010--Hb_000742_290 Hb_010690_010--Hb_004531_130 Hb_020738_010 Hb_020738_010 Hb_010690_010--Hb_020738_010 Hb_010690_010--Hb_000742_290 Hb_010690_010--Hb_011574_020 Hb_000742_290--Hb_004531_130 Hb_001059_110 Hb_001059_110 Hb_000742_290--Hb_001059_110 Hb_000085_410 Hb_000085_410 Hb_000742_290--Hb_000085_410 Hb_000922_050 Hb_000922_050 Hb_000742_290--Hb_000922_050 Hb_050898_030 Hb_050898_030 Hb_004531_130--Hb_050898_030 Hb_009070_010 Hb_009070_010 Hb_004531_130--Hb_009070_010 Hb_000861_060 Hb_000861_060 Hb_004531_130--Hb_000861_060 Hb_004531_130--Hb_020738_010 Hb_011574_020--Hb_020738_010 Hb_011574_020--Hb_001638_340 Hb_059275_010 Hb_059275_010 Hb_011574_020--Hb_059275_010 Hb_000012_350 Hb_000012_350 Hb_011574_020--Hb_000012_350 Hb_008895_020 Hb_008895_020 Hb_011574_020--Hb_008895_020 Hb_001794_040 Hb_001794_040 Hb_011574_020--Hb_001794_040 Hb_001110_060 Hb_001110_060 Hb_000139_520--Hb_001110_060 Hb_000739_190 Hb_000739_190 Hb_000139_520--Hb_000739_190 Hb_003466_010 Hb_003466_010 Hb_000139_520--Hb_003466_010 Hb_001789_230 Hb_001789_230 Hb_000139_520--Hb_001789_230 Hb_000139_520--Hb_050898_030 Hb_000139_520--Hb_000085_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0222353 0.200433 0.552066 1.07705 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.073709 0.0161099 0.245763

CAGE analysis