Hb_001882_110

Information

Type transcription factor
Description TF Family: mTERF
Location Contig1882: 113380-114546
Sequence    

Annotation

kegg
ID rcu:RCOM_0454380
description hypothetical protein
nr
ID XP_002529476.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SU07
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0454380 PE=4 SV=1
Gene Ontology
ID GO:0003676
description rna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18589: 113210-116330 , PASA_asmbl_18590: 113225-115512
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001882_110 0.0 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
2 Hb_002320_070 0.1220701306 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003894_040 0.1287067734 - - nucleotide binding protein, putative [Ricinus communis]
4 Hb_000637_140 0.1435818312 - - PREDICTED: actin-related protein 4-like [Jatropha curcas]
5 Hb_002681_170 0.1440940795 - - PREDICTED: probable methyltransferase PMT9 [Jatropha curcas]
6 Hb_000365_160 0.1442014475 - - PREDICTED: serine/threonine-protein kinase At5g01020 [Jatropha curcas]
7 Hb_002805_060 0.146809773 - - PREDICTED: signal peptide peptidase [Jatropha curcas]
8 Hb_009485_020 0.1470775677 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
9 Hb_073973_160 0.1471233473 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
10 Hb_000453_040 0.1479873013 - - Triosephosphate isomerase, cytosolic [Gossypium arboreum]
11 Hb_000735_050 0.1507996571 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]
12 Hb_000347_270 0.1530461605 - - PREDICTED: uncharacterized protein LOC105631376 [Jatropha curcas]
13 Hb_018202_050 0.1531205839 - - PREDICTED: tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A [Jatropha curcas]
14 Hb_028707_080 0.1532528061 - - plasma membrane aquaporin 1 [Hevea brasiliensis]
15 Hb_004935_080 0.1543257654 - - AT3g13060/MGH6_17 [Arabidopsis thaliana]
16 Hb_000031_280 0.1558433762 - - -
17 Hb_001301_090 0.156874386 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000031_290 0.157274221 - - hypothetical protein POPTR_0006s28540g [Populus trichocarpa]
19 Hb_076874_010 0.1580683848 - - PREDICTED: ER lumen protein-retaining receptor [Jatropha curcas]
20 Hb_130323_010 0.1601635884 - - Myosin heavy chain, fast skeletal muscle, embryonic, putative [Ricinus communis]

Gene co-expression network

sample Hb_001882_110 Hb_001882_110 Hb_002320_070 Hb_002320_070 Hb_001882_110--Hb_002320_070 Hb_003894_040 Hb_003894_040 Hb_001882_110--Hb_003894_040 Hb_000637_140 Hb_000637_140 Hb_001882_110--Hb_000637_140 Hb_002681_170 Hb_002681_170 Hb_001882_110--Hb_002681_170 Hb_000365_160 Hb_000365_160 Hb_001882_110--Hb_000365_160 Hb_002805_060 Hb_002805_060 Hb_001882_110--Hb_002805_060 Hb_005408_020 Hb_005408_020 Hb_002320_070--Hb_005408_020 Hb_073973_160 Hb_073973_160 Hb_002320_070--Hb_073973_160 Hb_010925_020 Hb_010925_020 Hb_002320_070--Hb_010925_020 Hb_002307_350 Hb_002307_350 Hb_002320_070--Hb_002307_350 Hb_002320_070--Hb_003894_040 Hb_009119_030 Hb_009119_030 Hb_002320_070--Hb_009119_030 Hb_003894_040--Hb_002805_060 Hb_000599_170 Hb_000599_170 Hb_003894_040--Hb_000599_170 Hb_018202_050 Hb_018202_050 Hb_003894_040--Hb_018202_050 Hb_027380_030 Hb_027380_030 Hb_003894_040--Hb_027380_030 Hb_001301_220 Hb_001301_220 Hb_003894_040--Hb_001301_220 Hb_006915_020 Hb_006915_020 Hb_003894_040--Hb_006915_020 Hb_000608_350 Hb_000608_350 Hb_000637_140--Hb_000608_350 Hb_007800_020 Hb_007800_020 Hb_000637_140--Hb_007800_020 Hb_162060_010 Hb_162060_010 Hb_000637_140--Hb_162060_010 Hb_008226_090 Hb_008226_090 Hb_000637_140--Hb_008226_090 Hb_000034_080 Hb_000034_080 Hb_000637_140--Hb_000034_080 Hb_003038_120 Hb_003038_120 Hb_000637_140--Hb_003038_120 Hb_002249_120 Hb_002249_120 Hb_002681_170--Hb_002249_120 Hb_000031_280 Hb_000031_280 Hb_002681_170--Hb_000031_280 Hb_002092_100 Hb_002092_100 Hb_002681_170--Hb_002092_100 Hb_008556_030 Hb_008556_030 Hb_002681_170--Hb_008556_030 Hb_002681_170--Hb_002805_060 Hb_000809_210 Hb_000809_210 Hb_002681_170--Hb_000809_210 Hb_004920_060 Hb_004920_060 Hb_000365_160--Hb_004920_060 Hb_001910_020 Hb_001910_020 Hb_000365_160--Hb_001910_020 Hb_000365_160--Hb_002307_350 Hb_008246_030 Hb_008246_030 Hb_000365_160--Hb_008246_030 Hb_002411_180 Hb_002411_180 Hb_000365_160--Hb_002411_180 Hb_000365_160--Hb_005408_020 Hb_002805_060--Hb_027380_030 Hb_002805_060--Hb_002092_100 Hb_002805_060--Hb_000599_170 Hb_002896_060 Hb_002896_060 Hb_002805_060--Hb_002896_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.13695 2.56678 3.15324 4.74916 5.73865 4.46735
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.25852 1.22094 0.245187 0.793549 1.56823

CAGE analysis