Hb_001883_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig1883: 19268-20764
Sequence    

Annotation

kegg
ID pmum:103342711
description disease resistance protein RPM1-like
nr
ID XP_012077051.1
description PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
swissprot
ID Q39214
description Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1
trembl
ID A0A067LB31
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17219 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18609: 18727-19271 , PASA_asmbl_18613: 20622-26984
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001883_010 0.0 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
2 Hb_001579_060 0.0795132167 - - carbonic anhydrase, putative [Ricinus communis]
3 Hb_032695_010 0.0810957592 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2 [Vitis vinifera]
4 Hb_000694_050 0.0830019249 - - Nuclease PA3, putative [Ricinus communis]
5 Hb_000680_130 0.0966056532 - - beta-galactosidase, putative [Ricinus communis]
6 Hb_000025_590 0.0996421909 - - PREDICTED: cytochrome P450 94A1-like isoform X1 [Jatropha curcas]
7 Hb_006827_030 0.1009473903 - - oligopeptide transporter, putative [Ricinus communis]
8 Hb_003680_010 0.1063513025 - - UDP-glucosyltransferase, putative [Ricinus communis]
9 Hb_000987_020 0.1065448662 - - PREDICTED: protein trichome birefringence-like 35 [Jatropha curcas]
10 Hb_002871_110 0.111075701 transcription factor TF Family: ARF hypothetical protein POPTR_0014s12980g [Populus trichocarpa]
11 Hb_000010_370 0.1166667418 - - PREDICTED: uncharacterized protein LOC105640263 [Jatropha curcas]
12 Hb_146901_010 0.1198626064 - - LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]
13 Hb_002615_080 0.1204155576 - - PREDICTED: non-specific phospholipase C2 [Jatropha curcas]
14 Hb_001417_060 0.1236548836 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
15 Hb_001046_030 0.124619292 - - UDP-glucosyltransferase, putative [Ricinus communis]
16 Hb_004946_010 0.1254592592 - - hypothetical protein POPTR_0013s035502g, partial [Populus trichocarpa]
17 Hb_002636_070 0.1260965966 - - PREDICTED: putative U-box domain-containing protein 42 [Jatropha curcas]
18 Hb_005488_030 0.1266484975 - - F3F9.11 [Arabidopsis lyrata subsp. lyrata]
19 Hb_000130_480 0.1268109826 - - PREDICTED: histone-lysine N-methyltransferase SETD1B [Jatropha curcas]
20 Hb_000968_010 0.1280347156 - - PREDICTED: glutamate receptor 3.7 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001883_010 Hb_001883_010 Hb_001579_060 Hb_001579_060 Hb_001883_010--Hb_001579_060 Hb_032695_010 Hb_032695_010 Hb_001883_010--Hb_032695_010 Hb_000694_050 Hb_000694_050 Hb_001883_010--Hb_000694_050 Hb_000680_130 Hb_000680_130 Hb_001883_010--Hb_000680_130 Hb_000025_590 Hb_000025_590 Hb_001883_010--Hb_000025_590 Hb_006827_030 Hb_006827_030 Hb_001883_010--Hb_006827_030 Hb_001579_060--Hb_006827_030 Hb_001579_060--Hb_000694_050 Hb_000987_020 Hb_000987_020 Hb_001579_060--Hb_000987_020 Hb_001579_060--Hb_000680_130 Hb_000968_010 Hb_000968_010 Hb_001579_060--Hb_000968_010 Hb_032695_010--Hb_000025_590 Hb_032695_010--Hb_000680_130 Hb_017358_020 Hb_017358_020 Hb_032695_010--Hb_017358_020 Hb_001046_030 Hb_001046_030 Hb_032695_010--Hb_001046_030 Hb_032695_010--Hb_000987_020 Hb_000694_050--Hb_000987_020 Hb_002871_110 Hb_002871_110 Hb_000694_050--Hb_002871_110 Hb_002601_140 Hb_002601_140 Hb_000694_050--Hb_002601_140 Hb_002078_320 Hb_002078_320 Hb_000694_050--Hb_002078_320 Hb_000373_010 Hb_000373_010 Hb_000680_130--Hb_000373_010 Hb_000705_040 Hb_000705_040 Hb_000680_130--Hb_000705_040 Hb_002155_020 Hb_002155_020 Hb_000680_130--Hb_002155_020 Hb_002636_070 Hb_002636_070 Hb_000680_130--Hb_002636_070 Hb_000010_370 Hb_000010_370 Hb_000025_590--Hb_000010_370 Hb_000025_590--Hb_002871_110 Hb_000215_290 Hb_000215_290 Hb_000025_590--Hb_000215_290 Hb_006970_170 Hb_006970_170 Hb_000025_590--Hb_006970_170 Hb_032779_010 Hb_032779_010 Hb_000025_590--Hb_032779_010 Hb_171168_010 Hb_171168_010 Hb_006827_030--Hb_171168_010 Hb_007035_010 Hb_007035_010 Hb_006827_030--Hb_007035_010 Hb_000049_170 Hb_000049_170 Hb_006827_030--Hb_000049_170 Hb_007113_020 Hb_007113_020 Hb_006827_030--Hb_007113_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0341651 7.02751 10.378 8.06081 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.28171 0.0492508 0.18505 5.85853 17.1024

CAGE analysis