Hb_001890_020

Information

Type -
Description -
Location Contig1890: 12495-21403
Sequence    

Annotation

kegg
ID cic:CICLE_v10025198mg
description hypothetical protein
nr
ID XP_006427403.1
description hypothetical protein CICLE_v10025198mg [Citrus clementina]
swissprot
ID Q8LPB4
description Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1
trembl
ID V4S016
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025198mg PE=4 SV=1
Gene Ontology
ID GO:0016021
description lrr receptor-like serine threonine-protein kinase gso1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18736: 13158-19432 , PASA_asmbl_18738: 19547-19679
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001890_020 0.0 - - hypothetical protein CICLE_v10025198mg [Citrus clementina]
2 Hb_005725_150 0.1390353159 - - PREDICTED: kinesin-related protein 11 isoform X1 [Jatropha curcas]
3 Hb_010180_030 0.1515831682 - - PREDICTED: WEB family protein At2g38370-like [Jatropha curcas]
4 Hb_029510_130 0.1600267694 - - PREDICTED: malonate--CoA ligase [Jatropha curcas]
5 Hb_003784_040 0.1636244919 - - Afadin- and alpha-actinin-binding protein, putative [Ricinus communis]
6 Hb_005504_040 0.1721765756 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001478_020 0.1792728269 desease resistance Gene Name: AAA thyroid hormone receptor interactor, putative [Ricinus communis]
8 Hb_003399_100 0.1849768673 - - PREDICTED: putative cyclin-A3-1 [Jatropha curcas]
9 Hb_001780_080 0.186114228 - - PREDICTED: tubulin beta-2 chain [Jatropha curcas]
10 Hb_000349_230 0.1890479412 - - PREDICTED: protein TPX2 [Jatropha curcas]
11 Hb_000051_080 0.1919348026 - - PREDICTED: DNA (cytosine-5)-methyltransferase CMT3 [Jatropha curcas]
12 Hb_002007_280 0.1963717247 - - PREDICTED: kinesin-like protein KIFC3 [Jatropha curcas]
13 Hb_089889_010 0.2007015009 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
14 Hb_038044_010 0.2063552716 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
15 Hb_006275_060 0.2070136318 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
16 Hb_000345_130 0.2119387865 - - unnamed protein product [Coffea canephora]
17 Hb_005162_130 0.2132054372 - - PREDICTED: uncharacterized protein LOC105648433 isoform X2 [Jatropha curcas]
18 Hb_000526_010 0.2140533978 - - PREDICTED: uroporphyrinogen-III C-methyltransferase [Jatropha curcas]
19 Hb_002007_040 0.2142109748 - - unnamed protein product [Coffea canephora]
20 Hb_001501_070 0.2145923315 - - PREDICTED: condensin complex subunit 2 [Jatropha curcas]

Gene co-expression network

sample Hb_001890_020 Hb_001890_020 Hb_005725_150 Hb_005725_150 Hb_001890_020--Hb_005725_150 Hb_010180_030 Hb_010180_030 Hb_001890_020--Hb_010180_030 Hb_029510_130 Hb_029510_130 Hb_001890_020--Hb_029510_130 Hb_003784_040 Hb_003784_040 Hb_001890_020--Hb_003784_040 Hb_005504_040 Hb_005504_040 Hb_001890_020--Hb_005504_040 Hb_001478_020 Hb_001478_020 Hb_001890_020--Hb_001478_020 Hb_000051_080 Hb_000051_080 Hb_005725_150--Hb_000051_080 Hb_005725_150--Hb_003784_040 Hb_005725_150--Hb_010180_030 Hb_005725_150--Hb_001478_020 Hb_002007_040 Hb_002007_040 Hb_005725_150--Hb_002007_040 Hb_006275_060 Hb_006275_060 Hb_005725_150--Hb_006275_060 Hb_010180_030--Hb_001478_020 Hb_010180_030--Hb_003784_040 Hb_001501_070 Hb_001501_070 Hb_010180_030--Hb_001501_070 Hb_001780_080 Hb_001780_080 Hb_010180_030--Hb_001780_080 Hb_010180_030--Hb_005504_040 Hb_038044_010 Hb_038044_010 Hb_029510_130--Hb_038044_010 Hb_029510_130--Hb_001501_070 Hb_029510_130--Hb_001478_020 Hb_029510_130--Hb_010180_030 Hb_002007_280 Hb_002007_280 Hb_029510_130--Hb_002007_280 Hb_024973_020 Hb_024973_020 Hb_029510_130--Hb_024973_020 Hb_003784_040--Hb_005504_040 Hb_000139_280 Hb_000139_280 Hb_003784_040--Hb_000139_280 Hb_003784_040--Hb_001478_020 Hb_003784_040--Hb_001780_080 Hb_005504_040--Hb_000139_280 Hb_005504_040--Hb_001780_080 Hb_005504_040--Hb_006275_060 Hb_005504_040--Hb_005725_150 Hb_001478_020--Hb_001501_070 Hb_001478_020--Hb_038044_010 Hb_001478_020--Hb_001780_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.166033 0.133396 11.6517 3.12048 0.273342 0.669543
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.600262 0.89477 2.61402 1.3296 0.727656

CAGE analysis