Hb_001892_020

Information

Type -
Description -
Location Contig1892: 9923-19025
Sequence    

Annotation

kegg
ID rcu:RCOM_0843760
description hypothetical protein
nr
ID XP_012072229.1
description PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
swissprot
ID Q8W486
description Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=2 SV=1
trembl
ID A0A067KSU2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04706 PE=4 SV=1
Gene Ontology
ID GO:0016757
description o-fucosyltransferase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001892_020 0.0 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
2 Hb_004907_110 0.0697537584 - - PREDICTED: BTB/POZ and MATH domain-containing protein 3 isoform X1 [Jatropha curcas]
3 Hb_000280_080 0.0800150502 - - hypothetical protein JCGZ_13377 [Jatropha curcas]
4 Hb_007532_030 0.0830002343 - - PREDICTED: F-box/kelch-repeat protein At1g30090 [Jatropha curcas]
5 Hb_002631_060 0.0833208233 - - PREDICTED: uncharacterized protein LOC105646151 [Jatropha curcas]
6 Hb_001178_140 0.0844728725 - - PREDICTED: uncharacterized protein LOC105629472 isoform X1 [Jatropha curcas]
7 Hb_010883_090 0.0860215631 - - PREDICTED: uncharacterized protein LOC105638888 isoform X1 [Jatropha curcas]
8 Hb_003976_030 0.0863854783 - - PREDICTED: probable phenylalanine--tRNA ligase beta subunit [Jatropha curcas]
9 Hb_008725_260 0.0882599178 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
10 Hb_001617_050 0.0887508565 - - PREDICTED: uncharacterized protein LOC105649351 isoform X1 [Jatropha curcas]
11 Hb_009178_030 0.0889651872 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000061_460 0.0902480901 transcription factor TF Family: SNF2 ATP binding protein, putative [Ricinus communis]
13 Hb_000230_390 0.0920314263 - - PREDICTED: F-box/kelch-repeat protein At3g23880 [Jatropha curcas]
14 Hb_004204_170 0.092212526 - - synaptosomal associated protein, putative [Ricinus communis]
15 Hb_040575_010 0.0932787205 - - PREDICTED: uncharacterized protein LOC105637675 [Jatropha curcas]
16 Hb_003376_350 0.0941335334 - - PREDICTED: CASP-like protein 5A1 isoform X1 [Jatropha curcas]
17 Hb_002218_010 0.0954253565 transcription factor TF Family: Orphans ethylene receptor, putative [Ricinus communis]
18 Hb_000049_310 0.0956287696 - - Myosin-J heavy chain, partial [Glycine soja]
19 Hb_010128_080 0.0959166175 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like isoform X1 [Jatropha curcas]
20 Hb_005348_140 0.0964220243 - - PREDICTED: ubiquinone biosynthesis protein COQ9-B, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_001892_020 Hb_001892_020 Hb_004907_110 Hb_004907_110 Hb_001892_020--Hb_004907_110 Hb_000280_080 Hb_000280_080 Hb_001892_020--Hb_000280_080 Hb_007532_030 Hb_007532_030 Hb_001892_020--Hb_007532_030 Hb_002631_060 Hb_002631_060 Hb_001892_020--Hb_002631_060 Hb_001178_140 Hb_001178_140 Hb_001892_020--Hb_001178_140 Hb_010883_090 Hb_010883_090 Hb_001892_020--Hb_010883_090 Hb_000805_020 Hb_000805_020 Hb_004907_110--Hb_000805_020 Hb_004907_110--Hb_007532_030 Hb_008725_260 Hb_008725_260 Hb_004907_110--Hb_008725_260 Hb_031527_040 Hb_031527_040 Hb_004907_110--Hb_031527_040 Hb_000876_070 Hb_000876_070 Hb_004907_110--Hb_000876_070 Hb_004907_110--Hb_002631_060 Hb_000061_460 Hb_000061_460 Hb_000280_080--Hb_000061_460 Hb_003976_030 Hb_003976_030 Hb_000280_080--Hb_003976_030 Hb_000009_320 Hb_000009_320 Hb_000280_080--Hb_000009_320 Hb_000049_310 Hb_000049_310 Hb_000280_080--Hb_000049_310 Hb_000280_080--Hb_004907_110 Hb_009178_030 Hb_009178_030 Hb_007532_030--Hb_009178_030 Hb_002218_010 Hb_002218_010 Hb_007532_030--Hb_002218_010 Hb_007532_030--Hb_008725_260 Hb_007508_090 Hb_007508_090 Hb_007532_030--Hb_007508_090 Hb_000189_560 Hb_000189_560 Hb_007532_030--Hb_000189_560 Hb_002631_060--Hb_010883_090 Hb_003376_350 Hb_003376_350 Hb_002631_060--Hb_003376_350 Hb_007416_320 Hb_007416_320 Hb_002631_060--Hb_007416_320 Hb_000260_270 Hb_000260_270 Hb_002631_060--Hb_000260_270 Hb_000395_190 Hb_000395_190 Hb_002631_060--Hb_000395_190 Hb_000085_100 Hb_000085_100 Hb_001178_140--Hb_000085_100 Hb_000859_060 Hb_000859_060 Hb_001178_140--Hb_000859_060 Hb_000629_010 Hb_000629_010 Hb_001178_140--Hb_000629_010 Hb_007813_040 Hb_007813_040 Hb_001178_140--Hb_007813_040 Hb_004204_170 Hb_004204_170 Hb_001178_140--Hb_004204_170 Hb_003994_060 Hb_003994_060 Hb_010883_090--Hb_003994_060 Hb_010883_090--Hb_000805_020 Hb_003687_240 Hb_003687_240 Hb_010883_090--Hb_003687_240 Hb_010883_090--Hb_004907_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.0108 3.48967 1.8388 2.53807 2.6321 3.20251
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.98562 3.47169 6.72325 2.83928 1.05313

CAGE analysis