Hb_001892_070

Information

Type -
Description -
Location Contig1892: 75252-80016
Sequence    

Annotation

kegg
ID rcu:RCOM_0843790
description hypothetical protein
nr
ID XP_012072235.1
description PREDICTED: uncharacterized protein LOC105634071 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KPC1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04709 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001892_070 0.0 - - PREDICTED: uncharacterized protein LOC105634071 [Jatropha curcas]
2 Hb_001016_100 0.0824273848 - - PREDICTED: V-type proton ATPase subunit E-like [Pyrus x bretschneideri]
3 Hb_000403_070 0.0887232016 - - PREDICTED: iron-sulfur assembly protein IscA, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_002045_060 0.0895843569 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Jatropha curcas]
5 Hb_008566_030 0.0899869761 - - hypothetical protein POPTR_0013s02780g [Populus trichocarpa]
6 Hb_000035_480 0.0902518195 - - PREDICTED: probable protein phosphatase 2C 59 [Jatropha curcas]
7 Hb_000457_290 0.0909681091 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
8 Hb_000920_200 0.0913829461 - - PREDICTED: E3 ubiquitin-protein ligase SINAT5-like isoform X1 [Jatropha curcas]
9 Hb_001575_060 0.0956421068 - - PREDICTED: 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial-like [Jatropha curcas]
10 Hb_004257_010 0.0963249259 - - CMP-sialic acid transporter, putative [Ricinus communis]
11 Hb_000428_060 0.098580742 - - malate dehydrogenase, putative [Ricinus communis]
12 Hb_002968_040 0.0989332184 - - PREDICTED: 26S protease regulatory subunit 7-like [Jatropha curcas]
13 Hb_015183_060 0.1002682275 - - hypothetical protein JCGZ_06621 [Jatropha curcas]
14 Hb_000983_030 0.1008316724 - - PREDICTED: 26S protease regulatory subunit S10B homolog B [Jatropha curcas]
15 Hb_001307_030 0.1016291493 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]
16 Hb_003360_040 0.1030197414 - - PREDICTED: uncharacterized protein LOC105634704 [Jatropha curcas]
17 Hb_006846_150 0.104063587 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002876_020 0.104529797 - - PREDICTED: maf-like protein DDB_G0281937 isoform X2 [Jatropha curcas]
19 Hb_002392_010 0.1061426238 - - PREDICTED: apurinic endonuclease-redox protein isoform X4 [Jatropha curcas]
20 Hb_005276_040 0.1066635139 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Jatropha curcas]

Gene co-expression network

sample Hb_001892_070 Hb_001892_070 Hb_001016_100 Hb_001016_100 Hb_001892_070--Hb_001016_100 Hb_000403_070 Hb_000403_070 Hb_001892_070--Hb_000403_070 Hb_002045_060 Hb_002045_060 Hb_001892_070--Hb_002045_060 Hb_008566_030 Hb_008566_030 Hb_001892_070--Hb_008566_030 Hb_000035_480 Hb_000035_480 Hb_001892_070--Hb_000035_480 Hb_000457_290 Hb_000457_290 Hb_001892_070--Hb_000457_290 Hb_000920_200 Hb_000920_200 Hb_001016_100--Hb_000920_200 Hb_003360_040 Hb_003360_040 Hb_001016_100--Hb_003360_040 Hb_000140_090 Hb_000140_090 Hb_001016_100--Hb_000140_090 Hb_002968_040 Hb_002968_040 Hb_001016_100--Hb_002968_040 Hb_000964_030 Hb_000964_030 Hb_001016_100--Hb_000964_030 Hb_006846_150 Hb_006846_150 Hb_000403_070--Hb_006846_150 Hb_140627_010 Hb_140627_010 Hb_000403_070--Hb_140627_010 Hb_001575_060 Hb_001575_060 Hb_000403_070--Hb_001575_060 Hb_001240_010 Hb_001240_010 Hb_000403_070--Hb_001240_010 Hb_000465_070 Hb_000465_070 Hb_000403_070--Hb_000465_070 Hb_000403_070--Hb_000457_290 Hb_005276_040 Hb_005276_040 Hb_002045_060--Hb_005276_040 Hb_004123_020 Hb_004123_020 Hb_002045_060--Hb_004123_020 Hb_000032_370 Hb_000032_370 Hb_002045_060--Hb_000032_370 Hb_000428_060 Hb_000428_060 Hb_002045_060--Hb_000428_060 Hb_004317_030 Hb_004317_030 Hb_002045_060--Hb_004317_030 Hb_001307_030 Hb_001307_030 Hb_008566_030--Hb_001307_030 Hb_001541_120 Hb_001541_120 Hb_008566_030--Hb_001541_120 Hb_000116_260 Hb_000116_260 Hb_008566_030--Hb_000116_260 Hb_002677_020 Hb_002677_020 Hb_008566_030--Hb_002677_020 Hb_001514_120 Hb_001514_120 Hb_008566_030--Hb_001514_120 Hb_007416_060 Hb_007416_060 Hb_008566_030--Hb_007416_060 Hb_000035_480--Hb_000465_070 Hb_000035_480--Hb_140627_010 Hb_000035_480--Hb_000457_290 Hb_000035_480--Hb_000403_070 Hb_000392_550 Hb_000392_550 Hb_000035_480--Hb_000392_550 Hb_000457_290--Hb_000465_070 Hb_000457_290--Hb_140627_010 Hb_002232_060 Hb_002232_060 Hb_000457_290--Hb_002232_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.27908 1.65219 4.6615 5.47651 1.83124 1.52807
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.89915 7.14568 5.88207 4.15793 6.34087

CAGE analysis